Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 0.0e+00 1280.8 752 100.0
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.6e-295 1019.2 688 89.4
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 2.2e-281 972.2 795 71.9
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 2.1e-279 965.7 793 71.8
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.8e-251 872.8 803 66.1
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 3.6e-239 832.0 807 65.2
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 9.8e-237 823.9 807 63.2
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 8.6e-233 810.8 805 62.6
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 2.3e-230 802.7 800 62.9
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.7e-228 795.4 807 62.1
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.6e-223 780.0 812 59.6
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.8e-222 776.5 820 59.9
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 9.2e-211 737.6 812 57.4
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 4.7e-207 725.3 837 55.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.5e-192 676.4 746 60.5
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 3.5e-186 656.0 639 61.5
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.4e-179 634.0 830 51.6
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 5.5e-179 632.1 812 52.3
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 9.6e-176 621.3 823 52.0
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 9.6e-176 621.3 798 55.8
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 2.8e-175 619.8 812 51.5
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 8.4e-172 608.2 812 51.0
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.2e-171 606.3 828 49.6
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.5e-170 602.8 780 51.9
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 6.3e-167 592.0 812 50.1
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.1e-166 589.7 804 48.9
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 5.0e-164 582.4 813 49.3
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.9e-163 580.5 808 49.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 9.4e-163 578.2 809 50.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.2e-162 577.8 815 48.8
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 3.6e-162 576.2 818 49.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 3.0e-161 573.2 816 48.8
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.1e-161 572.4 804 48.6
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 5.7e-160 568.9 801 48.8
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 7.4e-160 568.5 805 48.7
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.3e-159 567.8 804 48.0
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.2e-159 567.0 805 48.7
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.4e-158 564.3 795 49.3
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.8e-158 563.9 804 48.8
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.8e-158 563.9 817 47.9
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.9e-158 562.0 805 48.3
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.4e-157 559.7 810 47.9
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.7e-156 557.4 835 47.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.9e-156 556.6 829 47.3
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.5e-156 555.4 817 49.3
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 4.7e-154 549.3 812 46.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.8e-153 547.4 820 46.7
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 5.1e-153 545.8 823 48.5
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 6.7e-153 545.4 531 63.5
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.6e-152 543.5 774 50.0
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.3e-152 543.1 722 49.2
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 7.4e-152 542.0 740 51.1
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 7.0e-150 535.4 837 47.0
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 2.0e-149 533.9 857 45.6
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 5.0e-148 529.3 822 45.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 9.4e-147 525.0 804 45.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.9e-145 519.6 802 47.6
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 3.9e-145 519.6 773 47.2
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 8.8e-145 518.5 823 47.0
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 8.8e-145 518.5 820 44.6
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.5e-144 517.7 801 46.4
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.3e-144 516.5 792 46.6
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.3e-143 514.6 784 45.9
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 5.9e-141 505.8 857 43.5
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 8.5e-140 501.9 825 44.8
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 8.5e-140 501.9 804 44.4
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.1e-139 501.5 808 44.1
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.1e-139 501.5 804 44.3
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.5e-139 499.2 806 44.7
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.7e-138 496.1 808 44.3
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 5.7e-136 489.2 553 57.5
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.8e-135 486.1 809 46.1
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.3e-135 485.7 808 44.8
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.5e-133 479.6 819 42.9
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.8e-132 476.5 814 47.5
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 8.5e-132 475.3 808 42.7
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.1e-131 474.9 882 42.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.2e-131 473.4 800 43.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 4.2e-131 473.0 811 47.6
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 2.7e-130 470.3 804 48.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 3.6e-130 469.9 806 43.8
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 3.6e-130 469.9 811 42.9
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.5e-128 464.5 778 43.8
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.6e-128 463.8 770 47.1
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.3e-127 461.5 719 49.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.8e-127 459.5 713 48.0
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.8e-126 457.6 770 46.8
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-126 457.2 766 48.0
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 3.1e-126 456.8 766 48.7
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-125 454.5 766 48.0
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-125 454.5 766 48.0
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.6e-125 454.5 809 47.6
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 2.7e-125 453.8 766 48.0
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.7e-125 453.8 808 42.8
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 4.5e-125 453.0 765 47.5
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 8.6e-124 448.7 752 47.9
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.1e-123 448.4 787 42.8
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 4.2e-123 446.4 822 42.3
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 5.5e-123 446.0 763 47.3
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.5e-123 445.3 809 40.8
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.2e-120 438.3 797 45.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.5e-120 438.0 775 46.7
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.8e-118 431.0 833 40.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.4e-118 430.6 806 45.0
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 2.4e-118 430.6 637 46.3
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 3.1e-118 430.3 637 46.3
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.5e-115 421.4 774 42.8
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-115 421.0 688 46.7
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 6.8e-113 412.5 762 43.0
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-112 410.6 655 48.1
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 2.6e-112 410.6 809 44.6
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 7.5e-112 409.1 764 47.0
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.8e-112 408.7 792 41.2
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.9e-111 407.1 793 42.2
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.7e-111 406.8 800 44.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 9.2e-110 402.1 762 42.9
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 6.6e-108 396.0 752 40.2
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.1e-105 388.7 801 42.6
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.2e-104 385.2 802 42.6
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 4.4e-104 383.3 805 43.5
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.2e-102 377.1 748 39.6
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 4.1e-102 376.7 834 37.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 9.2e-102 375.6 716 40.6
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.0e-100 370.5 515 54.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.0e-100 370.5 639 43.2
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 5.6e-99 366.3 408 58.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 7.3e-99 365.9 778 42.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.8e-98 364.0 378 59.3
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.6e-98 363.6 731 41.9
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 6.2e-98 362.8 832 37.1
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 4.1e-94 350.1 801 40.3
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 9.2e-94 349.0 629 39.9
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.5e-93 347.1 763 38.8
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.6e-90 337.0 868 36.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 6.0e-85 319.7 359 56.8
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 4.3e-83 313.5 296 59.5
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-81 308.1 689 39.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.7e-69 267.7 619 36.5
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.5e-67 261.9 874 30.0
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.7e-63 248.4 291 50.2
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-62 243.0 249 60.6
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 2.3e-60 238.0 301 52.8
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.5e-59 235.3 367 43.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 4.8e-50 203.8 196 62.8
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 8.8e-44 183.0 291 40.2
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.8e-41 175.3 377 37.9
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.9e-39 167.9 176 61.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.1e-38 166.0 428 34.8
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 2.6e-35 154.8 119 67.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-30 139.0 445 32.1
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.4e-28 132.5 190 48.4
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.8e-23 114.4 103 56.3
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.0e-20 104.8 118 49.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 4.0e-20 104.4 270 34.1
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 7.7e-16 90.1 262 33.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.7e-15 89.0 170 36.5
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.8e-15 87.8 63 76.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.7e-13 81.6 193 31.1
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 6.1e-13 80.5 80 56.2
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-12 79.3 66 65.2
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-12 79.3 66 63.6
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 6.8e-12 77.0 66 65.2
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.5e-11 75.9 205 30.7
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.4e-11 74.3 66 62.1
arahy.Tifrunner.gnm1.ann1.0WEA7F Arachis hypogaea HOM05D003721 ORTHO05D004303 2.2e-10 72.0 66 60.6
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 4.9e-10 70.9 59 66.1
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 5.0e-07 60.8 119 41.2
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.6e-07 60.1 153 43.1


User provided reference genes

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