Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 0.0e+00 1572.0 842 100.0
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 0.0e+00 1229.5 854 79.6
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 0.0e+00 1153.3 847 76.6
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 0.0e+00 1139.0 852 75.0
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.4e-287 993.0 795 70.2
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 4.4e-286 988.0 834 66.8
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 9.5e-273 943.7 859 63.7
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 4.0e-263 911.8 845 63.4
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 3.7e-261 905.2 866 61.1
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 5.2e-255 884.8 843 61.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.4e-246 855.5 822 61.7
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 4.9e-221 771.9 768 59.5
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.8e-191 673.7 803 51.9
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 6.5e-189 665.2 818 50.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.5e-188 663.3 823 50.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 7.5e-185 651.7 809 50.9
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 7.0e-183 645.2 844 50.5
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 2.0e-182 643.7 815 50.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 7.7e-182 641.7 815 50.3
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.9e-181 639.8 812 48.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-180 637.5 812 48.2
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.9e-180 637.1 821 48.8
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.5e-180 636.7 823 49.8
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 4.2e-180 636.0 817 49.9
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 7.2e-180 635.2 839 48.6
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 9.4e-180 634.8 827 49.5
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.6e-179 634.0 828 49.0
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.3e-178 630.2 832 48.9
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.0e-177 627.1 827 48.0
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.6e-177 626.7 900 46.3
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 9.8e-177 624.8 846 47.6
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.8e-175 620.5 803 48.2
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 3.5e-174 616.3 791 49.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 8.0e-171 605.1 819 49.6
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.0e-170 604.7 789 48.3
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 3.0e-170 603.2 835 47.1
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 4.0e-170 602.8 792 48.2
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 8.8e-170 601.7 841 48.2
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.6e-169 600.1 838 47.9
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 6.3e-168 595.5 808 48.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.1e-167 594.7 792 47.5
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.4e-167 594.3 840 47.0
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.0e-165 585.9 823 46.4
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.1e-164 584.7 831 47.8
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.5e-164 584.3 790 46.7
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 3.3e-164 583.2 800 47.2
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 2.1e-163 580.5 828 47.0
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.8e-163 580.1 838 46.5
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.8e-163 580.1 796 46.5
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.6e-163 579.7 799 46.7
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 3.4e-161 573.2 493 67.3
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.4e-161 573.2 822 48.2
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 7.5e-161 572.0 818 46.8
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 8.3e-160 568.5 806 45.5
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.1e-159 568.2 826 45.8
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.8e-159 567.4 822 44.9
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.1e-159 566.2 821 46.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 4.6e-158 562.8 806 44.3
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.0e-157 560.1 850 44.2
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 6.6e-157 558.9 832 45.3
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.3e-156 556.6 818 45.6
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.6e-155 553.1 844 44.8
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 4.7e-155 552.7 797 46.2
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.0e-154 551.6 818 45.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 4.0e-154 549.7 800 45.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 8.9e-154 548.5 815 45.6
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 4.4e-153 546.2 819 44.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.1e-151 541.6 839 45.2
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.6e-150 537.7 847 43.6
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.7e-150 537.0 848 42.7
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.5e-150 536.6 841 44.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.0e-149 535.0 820 45.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 8.6e-149 531.9 786 45.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 3.3e-148 530.0 782 45.7
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 9.5e-148 528.5 813 44.9
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.6e-147 527.7 834 43.9
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 2.8e-147 526.9 814 44.5
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 8.1e-147 525.4 828 43.2
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.8e-146 524.2 679 50.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.1e-146 523.5 831 45.4
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.6e-145 520.4 825 42.9
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.3e-144 518.1 798 44.6
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 4.1e-143 513.1 834 43.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 8.6e-141 505.4 836 42.0
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.1e-140 505.0 698 47.1
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.9e-140 504.2 828 42.8
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.3e-140 503.1 692 46.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 5.6e-140 502.7 803 42.5
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 5.6e-140 502.7 803 42.6
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.4e-138 498.0 833 42.7
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 8.9e-138 495.4 809 42.3
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.4e-137 493.0 809 42.3
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 4.9e-136 489.6 752 43.6
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.4e-135 488.0 811 42.7
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 3.2e-135 486.9 529 54.1
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.2e-131 474.9 831 41.9
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.8e-131 473.8 831 41.5
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.5e-126 456.8 806 41.3
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 6.6e-125 452.6 806 40.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.1e-123 447.6 855 39.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 5.3e-122 443.0 884 38.7
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.2e-120 437.6 888 38.7
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 4.9e-120 436.4 818 40.7
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.3e-109 401.0 737 40.6
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.9e-100 371.3 759 37.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 4.3e-100 370.2 839 38.6
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 9.6e-100 369.0 877 35.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.5e-89 335.1 843 33.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 2.9e-88 330.9 502 44.0
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 4.6e-86 323.6 824 33.1
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.8e-85 321.6 502 43.6
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.7e-75 288.5 601 37.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 1.8e-66 258.5 258 59.7
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 3.1e-66 257.7 569 35.3
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.4e-60 237.7 194 69.6
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.1e-58 231.1 236 55.9
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 9.5e-55 219.5 494 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 4.4e-52 210.7 818 28.4
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 8.6e-48 196.4 160 63.8
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.3e-40 171.8 793 25.5
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 3.9e-40 171.0 465 33.5
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 9.5e-39 166.4 384 33.3
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 6.4e-35 153.7 674 29.2
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.4e-34 152.5 117 66.7
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 7.8e-33 146.7 180 45.0
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 3.7e-27 127.9 247 36.8
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 2.3e-24 118.6 170 44.1
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 4.6e-17 94.4 110 46.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.1e-15 89.7 126 49.2
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 9.9e-12 76.6 72 55.6
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 4.8e-06 57.8 169 34.9
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 8.1e-06 57.0 70 48.6


User provided reference genes

Program Settings