Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.0e-127 459.1 233 100.0
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.4e-109 399.1 233 88.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 5.6e-106 387.9 233 85.4
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.2e-103 380.2 233 83.3
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.6e-89 332.0 233 72.5
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 7.5e-87 324.3 233 71.7
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 8.3e-86 320.9 233 73.4
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.3e-82 308.9 234 70.1
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 4.3e-82 308.5 234 70.1
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 7.3e-82 307.8 233 67.0
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.1e-80 302.4 234 68.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.2e-78 296.2 234 68.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.3e-74 282.3 234 65.8
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.3e-74 282.0 232 65.5
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 4.7e-73 278.5 237 63.3
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.8e-72 276.6 236 61.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 5.2e-72 275.0 236 64.0
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.2e-71 273.9 237 64.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.0e-71 273.1 232 62.5
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 7.6e-71 271.2 232 63.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.3e-70 270.4 226 64.2
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.7e-70 270.0 227 65.2
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.2e-70 269.6 234 63.2
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.9e-70 268.5 226 62.4
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.4e-70 268.1 199 68.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.9e-69 266.5 225 61.8
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 9.3e-69 264.2 193 72.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.6e-68 263.5 224 61.6
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.7e-68 262.7 194 70.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.6e-68 261.9 228 61.8
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.6e-68 261.9 219 64.4
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.6e-68 261.9 194 70.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.0e-68 261.5 208 67.3
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.8e-68 261.2 194 69.6
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.8e-68 261.2 194 69.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 7.8e-68 261.2 233 61.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.0e-67 260.8 194 69.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.7e-67 260.0 222 63.5
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.9e-67 258.8 230 60.9
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 8.7e-67 257.7 230 60.0
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.5e-66 256.1 189 68.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 7.3e-66 254.6 194 66.0
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 9.6e-66 254.2 230 57.4
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.3e-65 253.8 198 64.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.1e-65 253.1 194 68.0
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.8e-64 250.0 227 61.7
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 2.4e-64 249.6 218 59.2
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.1e-64 249.2 233 58.4
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.1e-64 249.2 192 65.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.0e-64 248.8 228 59.6
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.3e-64 248.4 229 57.2
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 9.0e-64 247.7 194 64.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 9.0e-64 247.7 235 56.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-63 247.3 192 64.6
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.5e-63 246.9 234 56.4
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.0e-63 246.5 194 63.9
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 2.0e-63 246.5 198 65.7
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 2.0e-63 246.5 227 59.9
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 2.6e-63 246.1 228 57.9
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.6e-63 246.1 226 57.1
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 3.4e-63 245.7 230 57.0
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.5e-63 245.4 230 57.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 4.5e-63 245.4 194 63.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 7.6e-63 244.6 228 60.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.6e-63 244.6 193 63.2
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.7e-62 243.4 228 57.9
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.1e-61 240.7 215 59.1
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.9e-61 240.0 194 61.3
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.2e-61 238.8 225 59.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.2e-61 238.8 229 55.0
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 7.9e-60 234.6 232 53.9
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.3e-59 233.0 230 52.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.0e-59 232.6 195 66.2
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 3.0e-59 232.6 217 55.3
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.9e-59 232.3 228 54.4
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.1e-59 231.9 227 58.1
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 8.7e-59 231.1 217 54.8
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.5e-58 230.3 227 58.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 3.3e-58 229.2 194 57.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 3.3e-58 229.2 195 56.4
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.3e-58 228.8 191 60.7
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.3e-58 228.8 194 57.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 7.4e-58 228.0 194 58.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.4e-58 228.0 194 58.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.3e-57 227.3 194 56.7
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-57 227.3 194 56.7
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.6e-57 226.9 232 56.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 3.7e-57 225.7 195 55.9
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 4.8e-57 225.3 195 54.9
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.8e-57 225.3 192 58.9
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 6.2e-57 224.9 195 57.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 8.1e-57 224.6 188 58.0
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 8.1e-57 224.6 232 51.3
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.3e-56 221.9 192 58.3
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 6.9e-56 221.5 181 60.8
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.0e-56 221.1 188 56.9
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.5e-55 220.3 195 55.4
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 2.0e-55 219.9 194 57.7
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.4e-55 219.2 235 50.2
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.5e-55 218.8 193 63.7
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 5.8e-55 218.4 224 53.1
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 7.6e-55 218.0 195 52.8
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.3e-54 217.2 224 53.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 7.1e-53 211.5 206 57.3
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.1e-52 209.9 205 55.6
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-52 209.9 205 55.6
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.7e-52 209.5 221 51.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 4.6e-52 208.8 209 54.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.3e-51 207.2 205 55.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.3e-51 206.5 254 51.6
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.0e-51 206.1 195 53.3
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.8e-49 198.7 152 67.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.2e-49 198.0 182 58.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-48 197.6 221 51.6
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.5e-45 186.4 196 51.0
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 9.3e-45 184.5 182 54.4
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 9.3e-45 184.5 158 58.2
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.2e-44 184.1 172 55.2
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-43 180.3 142 64.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.0e-43 179.5 182 53.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 3.0e-43 179.5 226 46.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.1e-40 171.0 120 74.2
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.0e-38 164.5 231 45.5
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.2e-38 163.3 234 42.7
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 4.2e-37 159.1 210 43.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.0e-35 154.5 230 43.0
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 6.9e-32 141.7 154 50.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.0e-31 140.2 200 42.5
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.7e-30 137.1 134 53.0
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 6.1e-28 128.6 224 37.5
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 5.1e-27 125.6 209 39.2
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 9.7e-26 121.3 199 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.2e-25 118.2 202 38.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.1e-24 117.9 248 34.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.0e-22 111.3 74 74.3
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.2e-20 104.4 143 43.4
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 6.1e-20 102.1 115 46.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.6e-15 87.4 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.8e-14 82.8 95 47.4
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.0e-11 74.7 62 51.6
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 1.8e-08 63.9 139 33.8
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 5.3e-08 62.4 39 74.4
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 7.7e-07 58.5 77 45.5
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.2e-06 57.0 44 63.6


User provided reference genes

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