Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 4.5e-62 241.1 126 100.0
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 4.6e-54 214.5 126 88.1
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 9.8e-49 196.8 126 80.2
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 3.7e-48 194.9 124 80.6
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 5.4e-47 191.0 124 79.0
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 1.6e-46 189.5 128 75.8
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.7e-46 188.7 126 77.0
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 1.3e-45 186.4 128 74.2
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 3.6e-43 178.3 131 74.0
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 8.9e-42 173.7 128 71.9
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 4.4e-41 171.4 131 70.2
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 7.1e-39 164.1 143 64.3
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 3.9e-37 158.3 143 59.4
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.5e-36 156.4 137 59.9
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.9e-36 156.0 150 58.0
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.9e-36 156.0 134 61.9
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 2.5e-36 155.6 134 61.2
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 2.5e-36 155.6 135 63.0
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 3.3e-36 155.2 143 59.4
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 4.3e-36 154.8 139 60.4
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 5.6e-36 154.5 143 60.1
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 5.6e-36 154.5 145 57.9
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 9.5e-36 153.7 139 60.4
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 9.5e-36 153.7 133 62.4
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.2e-35 153.3 150 58.0
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 2.1e-35 152.5 131 62.6
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 2.1e-35 152.5 125 62.4
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 2.1e-35 152.5 134 60.4
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.1e-35 152.5 131 60.3
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.1e-35 152.5 148 58.1
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 2.8e-35 152.1 125 62.4
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 3.6e-35 151.8 143 58.7
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 3.6e-35 151.8 126 65.1
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 4.7e-35 151.4 138 58.7
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 4.7e-35 151.4 143 57.3
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 8.1e-35 150.6 131 61.1
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 8.1e-35 150.6 132 60.6
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 8.1e-35 150.6 132 60.6
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.1e-34 150.2 141 60.3
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 1.1e-34 150.2 133 60.2
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.4e-34 149.8 137 61.3
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.4e-34 149.8 149 59.1
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.8e-34 149.4 147 56.5
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 1.8e-34 149.4 145 55.9
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 2.3e-34 149.1 152 55.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 2.3e-34 149.1 140 58.6
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 3.1e-34 148.7 133 60.9
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 3.1e-34 148.7 133 59.4
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.1e-34 148.7 133 59.4
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.1e-34 148.7 145 55.2
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 4.0e-34 148.3 142 57.7
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 5.2e-34 147.9 131 61.8
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 6.8e-34 147.5 145 54.5
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 6.8e-34 147.5 145 54.5
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 6.8e-34 147.5 147 57.8
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 8.9e-34 147.1 134 59.7
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 8.9e-34 147.1 137 60.6
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.5e-33 146.4 133 57.9
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.0e-33 146.0 129 60.5
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.0e-33 146.0 125 60.0
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 2.0e-33 146.0 162 51.9
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.0e-33 146.0 144 58.3
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 2.6e-33 145.6 148 55.4
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 2.6e-33 145.6 122 61.5
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 7.6e-33 144.1 149 56.4
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.3e-32 143.3 116 64.7
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.3e-32 143.3 130 58.5
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.7e-32 142.9 133 57.1
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.7e-32 142.9 142 58.5
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 3.7e-32 141.7 158 52.5
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 4.9e-32 141.4 137 59.1
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 6.4e-32 141.0 147 56.5
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.1e-31 140.2 144 56.9
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 1.1e-31 140.2 120 60.8
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.4e-31 139.8 115 62.6
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.4e-31 139.8 145 55.9
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.4e-31 139.8 145 55.9
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 1.9e-31 139.4 126 57.9
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.4e-31 139.0 126 60.3
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 3.2e-31 138.7 148 56.1
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 4.1e-31 138.3 151 54.3
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.1e-31 138.3 139 55.4
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.1e-31 138.3 139 55.4
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 5.4e-31 137.9 115 62.6
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 5.4e-31 137.9 132 61.4
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 5.4e-31 137.9 128 57.0
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 7.1e-31 137.5 149 53.7
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 9.2e-31 137.1 150 53.3
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.2e-30 136.7 145 54.5
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.7e-30 135.6 145 54.5
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 2.7e-30 135.6 128 57.0
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 2.7e-30 135.6 137 53.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 3.5e-30 135.2 151 52.3
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 6.0e-30 134.4 135 57.8
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 7.8e-30 134.0 149 51.0
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.3e-29 133.3 145 53.8
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 1.7e-29 132.9 145 53.8
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.7e-29 132.9 136 54.4
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 3.9e-29 131.7 117 61.5
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 3.9e-29 131.7 117 61.5
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 3.9e-29 131.7 117 61.5
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 3.9e-29 131.7 117 61.5
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 5.1e-29 131.3 117 59.0
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.1e-28 130.2 139 51.8
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.5e-28 129.8 124 58.9
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 3.3e-28 128.6 135 54.1
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 2.1e-27 125.9 139 51.8
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 4.7e-27 124.8 144 50.7
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 8.9e-26 120.6 136 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 4.4e-25 118.2 127 52.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.1e-23 113.6 117 55.6
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.4e-23 113.2 134 50.0
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 1.9e-23 112.8 139 49.6
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 8.7e-21 104.0 149 46.3
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.5e-20 103.2 105 55.2
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 3.3e-20 102.1 143 46.9
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 4.3e-20 101.7 117 53.0
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.3e-19 100.1 106 54.7
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 8.1e-19 97.4 121 44.6
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 9.9e-17 90.5 119 47.1
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 2.9e-16 89.0 81 61.7
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.8e-16 88.6 129 45.7
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 9.3e-15 84.0 110 46.4
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 7.9e-14 80.9 58 70.7
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 1.3e-13 80.1 58 69.0
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 6.6e-13 77.8 120 40.0
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.2e-09 67.0 53 60.4
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 4.5e-09 65.1 65 47.7
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 2.2e-08 62.8 78 44.9
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 5.5e-07 58.2 106 38.7
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 4.6e-06 55.1 116 32.8
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 6.0e-06 54.7 116 32.8
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 6.0e-06 54.7 46 60.9
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.9e-06 54.3 115 33.0
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.9e-06 54.3 115 33.0
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.9e-06 54.3 115 33.0


User provided reference genes

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