Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G046701 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 7.2e-68 260.4 125 100.0
Glyma.18G252000 Glycine max HOM05D006055 ORTHO05D007480 1.3e-16 90.1 76 64.5
Glyma.09G242700 Glycine max HOM05D006055 ORTHO05D007480 1.7e-16 89.7 78 62.8
arahy.Tifrunner.gnm1.ann1.JP1X2J Arachis hypogaea HOM05D006055 ORTHO05D007480 6.4e-16 87.8 77 62.3
Cfa011074 Carpinus fangiana HOM05D006055 ORTHO05D007480 6.4e-16 87.8 73 65.8
arahy.Tifrunner.gnm1.ann1.C7FV9J Arachis hypogaea HOM05D006055 ORTHO05D007480 8.3e-16 87.4 77 62.3
QL04p030364 Quercus lobata HOM05D006055 ORTHO05D007480 1.1e-15 87.0 81 60.5
Psat0s3739g0040 Pisum sativum HOM05D006055 ORTHO05D007480 1.9e-15 86.3 121 48.8
CANSAT21G1800 Cannabis sativa HOM05D006055 ORTHO05D007480 2.4e-15 85.9 77 62.3
GSVIVG01018274001 Vitis vinifera HOM05D006055 ORTHO05D007480 3.2e-15 85.5 52 80.8
CANSAT21G1956 Cannabis sativa HOM05D006055 ORTHO05D007480 4.1e-15 85.1 77 62.3
Ca_08070_v3 Cicer arietinum L. HOM05D006055 ORTHO05D007480 4.1e-15 85.1 116 48.3
Prupe.2G131200 Prunus persica HOM05D006055 ORTHO05D007480 5.4e-15 84.7 75 62.7
PSO063G7218 Papaver somniferum HOM05D006055 ORTHO05D007480 7.0e-15 84.3 80 60.0
PSO832G3098 Papaver somniferum HOM05D006055 ORTHO05D007480 7.0e-15 84.3 80 60.0
Sabra14G0034300 Salix brachista HOM05D006055 ORTHO05D007480 1.2e-14 83.6 81 58.0
Medtr7g081715 Medicago truncatula HOM05D006055 ORTHO05D007480 2.1e-14 82.8 72 63.9
Peaxi162Scf00475g00522 Petunia axillaris HOM05D006055 ORTHO05D007480 2.1e-14 82.8 77 59.7
Eucgr.D01230 Eucalyptus grandis HOM05D006055 ORTHO05D007480 2.7e-14 82.4 52 80.8
Potri.014G047300 Populus trichocarpa HOM05D006055 ORTHO05D007480 2.7e-14 82.4 50 82.0
Nn1g00856 Nelumbo nucifera HOM05D006055 ORTHO05D007480 3.5e-14 82.0 50 82.0
Ah.16g103830 Amaranthus hybridus HOM05D006055 ORTHO05D007480 4.6e-14 81.6 102 52.0
MD02G1211800 Malus domestica HOM05D006055 ORTHO05D007480 4.6e-14 81.6 50 80.0
Atru.chr5.130 Acer truncatum HOM05D006055 ORTHO05D007480 6.0e-14 81.3 71 62.0
BcaC07g42437 Brassica carinata HOM05D006055 ORTHO05D007480 6.0e-14 81.3 83 55.4
A09p69350 Brassica napus HOM05D006055 ORTHO05D007480 6.0e-14 81.3 83 55.4
BolC8t52925H Brassica oleracea HOM05D006055 ORTHO05D007480 6.0e-14 81.3 83 55.4
HanXRQChr13g0423211 Helianthus annuus HOM05D006055 ORTHO05D007480 6.0e-14 81.3 118 45.8
Lalb_Chr13g0290591 Lupinus albus HOM05D006055 ORTHO05D007480 6.0e-14 81.3 50 80.0
TAR375G0976 Trochodendron aralioides HOM05D006055 ORTHO05D007480 6.0e-14 81.3 50 82.0
Ciclev10021096m.g Citrus clementina HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
Dinv43619 Davidia involucrata HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
Duzib138G0472 Durio zibethinus HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
Gohir.D08G040100 Gossypium hirsutum HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
Gorai.004G039000 Gossypium raimondii HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
Manes.05G054600 Manihot esculenta HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
PGR004G2446 Punica granatum HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
PGR144G0002 Punica granatum HOM05D006055 ORTHO05D007480 7.8e-14 80.9 50 82.0
CiPaw.13G026500 Carya illinoinensis HOM05D006055 ORTHO05D007480 1.0e-13 80.5 50 80.0
COL.COLO4_12412 Corchorus olitorius HOM05D006055 ORTHO05D007480 1.0e-13 80.5 50 80.0
Hma1.2p1_0009F.1_g005960 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 1.0e-13 80.5 50 80.0
Lj1g0005705 Lotus japonicus HOM05D006055 ORTHO05D007480 1.0e-13 80.5 52 82.7
Actinidia12146 Actinidia chinensis HOM05D006055 ORTHO05D007480 1.3e-13 80.1 118 44.9
BcaC07g42339 Brassica carinata HOM05D006055 ORTHO05D007480 1.3e-13 80.1 52 75.0
BraA09t42280Z Brassica rapa HOM05D006055 ORTHO05D007480 1.3e-13 80.1 52 75.0
Cpa.g.sc101.4 Carica papaya HOM05D006055 ORTHO05D007480 1.3e-13 80.1 50 78.0
AT1G02100 Arabidopsis thaliana HOM05D006055 ORTHO05D007480 1.7e-13 79.7 52 75.0
Carub.0001s0012 Capsella rubella HOM05D006055 ORTHO05D007480 1.7e-13 79.7 52 75.0
ClCG06G002510 Citrullus lanatus HOM05D006055 ORTHO05D007480 1.7e-13 79.7 50 80.0
MELO3C022277.2 Cucumis melo HOM05D006055 ORTHO05D007480 1.7e-13 79.7 50 80.0
CsaV3_6G008610 Cucumis sativus L. HOM05D006055 ORTHO05D007480 1.7e-13 79.7 50 80.0
Phvul.011G190400 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 1.7e-13 79.7 70 61.4
SGA_v2.0_scaffold43G16538 Striga asiatica HOM05D006055 ORTHO05D007480 1.7e-13 79.7 50 80.0
Thecc.01G394500 Theobroma cacao HOM05D006055 ORTHO05D007480 1.7e-13 79.7 50 80.0
VMungo1127G0075 Vigna mungo HOM05D006055 ORTHO05D007480 1.7e-13 79.7 70 61.4
AL1G10130 Arabidopsis lyrata HOM05D006055 ORTHO05D007480 2.3e-13 79.3 52 73.1
EL10Ac1g00759 Beta vulgaris HOM05D006055 ORTHO05D007480 2.3e-13 79.3 50 78.0
AUR62023405 Chenopodium quinoa HOM05D006055 ORTHO05D007480 2.3e-13 79.3 50 80.0
Lj9C557T10 Lonicera japonica HOM05D006055 ORTHO05D007480 2.3e-13 79.3 51 82.4
vmacro13494 Vaccinium macrocarpon HOM05D006055 ORTHO05D007480 2.3e-13 79.3 50 78.0
Aqoxy7G00862 Aquilegia oxysepala HOM05D006055 ORTHO05D007480 3.0e-13 79.0 51 80.4
CARHR000230 Cardamine hirsuta HOM05D006055 ORTHO05D007480 3.0e-13 79.0 50 78.0
Glyma.13G187100 Glycine max HOM05D006055 ORTHO05D007480 3.0e-13 79.0 70 62.9
Gohir.A08G029400 Gossypium hirsutum HOM05D006055 ORTHO05D007480 3.0e-13 79.0 50 80.0
AUR62013746 Chenopodium quinoa HOM05D006055 ORTHO05D007480 3.9e-13 78.6 50 78.0
MD07G1108400 Malus domestica HOM05D006055 ORTHO05D007480 3.9e-13 78.6 50 78.0
SGA_v2.0_scaffold116G32294 Striga asiatica HOM05D006055 ORTHO05D007480 3.9e-13 78.6 50 78.0
Nitab4.5_0000920g0150 Nicotiana tabacum HOM05D006055 ORTHO05D007480 5.1e-13 78.2 50 78.0
Nitab4.5_0013736g0020 Nicotiana tabacum HOM05D006055 ORTHO05D007480 5.1e-13 78.2 50 78.0
Aa31LG1G11510 Aethionema arabicum HOM05D006055 ORTHO05D007480 6.6e-13 77.8 50 76.0
Sp1g00170 Schrenkiella parvula HOM05D006055 ORTHO05D007480 6.6e-13 77.8 50 76.0
CAN.G1473.12 Capsicum annuum HOM05D006055 ORTHO05D007480 8.6e-13 77.4 119 42.9
ECA240G2571 Erigeron canadensis HOM05D006055 ORTHO05D007480 8.6e-13 77.4 50 76.0
Lsat_1_v5_gn_3_127241 Lactuca sativa HOM05D006055 ORTHO05D007480 8.6e-13 77.4 52 75.0
TPR.G14105 Trifolium pratense HOM05D006055 ORTHO05D007480 8.6e-13 77.4 120 45.8
MSTRG.28152 Avicennia marina HOM05D006055 ORTHO05D007480 1.5e-12 76.6 50 76.0
CSS0024076 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 1.5e-12 76.6 50 76.0
Solyc01g090280.4 Solanum lycopersicum HOM05D006055 ORTHO05D007480 1.5e-12 76.6 50 76.0
Sopen01g036070 Solanum pennellii HOM05D006055 ORTHO05D007480 1.5e-12 76.6 50 76.0
Migut.N01738 Erythranthe guttata HOM05D006055 ORTHO05D007480 1.9e-12 76.3 50 74.0
TWI14G0600 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 1.9e-12 76.3 50 74.0
TWI14G1276 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 1.9e-12 76.3 50 74.0
Thhalv10008126m.g Eutrema salsugineum HOM05D006055 ORTHO05D007480 2.5e-12 75.9 50 74.0
FAN10G2268 Fragaria x ananassa HOM05D006055 ORTHO05D007480 2.5e-12 75.9 105 46.7
RcHm_v2.0_Chr1g0347871 Rosa chinensis HOM05D006055 ORTHO05D007480 2.5e-12 75.9 50 76.0
Sed0027680 Sechium edule HOM05D006055 ORTHO05D007480 2.5e-12 75.9 50 74.0
SalBow5G1596 Salvia bowleyana HOM05D006055 ORTHO05D007480 3.3e-12 75.5 50 74.0
SalBow5G4451 Salvia bowleyana HOM05D006055 ORTHO05D007480 3.3e-12 75.5 50 74.0
Actinidia32500 Actinidia chinensis HOM05D006055 ORTHO05D007480 4.3e-12 75.1 50 74.0
Cc02_g25090 Coffea canephora HOM05D006055 ORTHO05D007480 4.3e-12 75.1 50 74.0
Oeu011253.1 Olea europaea HOM05D006055 ORTHO05D007480 5.6e-12 74.7 52 71.2
FvH4_7g10160 Fragaria vesca HOM05D006055 ORTHO05D007480 7.3e-12 74.3 50 74.0
FAN01G2488 Fragaria x ananassa HOM05D006055 ORTHO05D007480 7.3e-12 74.3 50 74.0
FAN06G2084 Fragaria x ananassa HOM05D006055 ORTHO05D007480 7.3e-12 74.3 50 74.0
FAN06G3912 Fragaria x ananassa HOM05D006055 ORTHO05D007480 7.3e-12 74.3 50 74.0
FAN10G0847 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.2e-11 73.6 50 74.0
SEGI_37557 Sequoiadendron giganteum HOM05D006055 ORTHO05D007480 2.8e-11 72.4 52 67.3
FAN03G3321 Fragaria x ananassa HOM05D006055 ORTHO05D007480 3.6e-11 72.0 50 70.0
CDE06G0143 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 6.2e-11 71.2 50 72.0
Duzib133G1573 Durio zibethinus HOM05D006055 ORTHO05D007480 8.1e-11 70.9 50 76.0
Rhsim07G0035700 Rhododendron simsii HOM05D006055 ORTHO05D007480 8.1e-11 70.9 59 66.1
SMO169G0267 Selaginella moellendorffii HOM05D006055 ORTHO05D007480 5.2e-10 68.2 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4855 Anthoceros agrestis HOM05D006055 ORTHO05D007480 1.2e-09 67.0 71 52.1
Mapoly0013s0063 Marchantia polymorpha HOM05D006055 ORTHO05D007480 5.8e-09 64.7 65 53.8
Os06g0140100 Oryza sativa ssp. japonica HOM05D006055 ORTHO05D007480 5.8e-09 64.7 44 70.5
Pp3c6_20710 Physcomitrium patens HOM05D006055 ORTHO05D007480 3.7e-08 62.0 46 63.0
CBR_g29813 Chara braunii HOM05D006055 ORTHO05D007480 4.1e-07 58.5 70 44.3
MBI04_g33722_MAGBIO Magnolia biondii HOM05D006055 ORTHO05D007480 3.5e-06 55.5 118 36.4


User provided reference genes

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