Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.8e-131 472.6 245 100.0
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 7.2e-96 354.4 251 77.3
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.5e-90 336.7 203 74.9
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.7e-87 325.9 213 70.9
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 8.8e-86 320.9 206 70.4
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.8e-84 315.8 211 67.8
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.5e-80 302.8 213 82.6
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.2e-72 275.4 212 59.4
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.1e-71 273.1 168 79.2
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 4.7e-71 271.9 203 62.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.3e-60 234.6 234 50.9
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.8e-59 233.4 212 56.1
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.0e-57 227.6 209 56.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 9.5e-56 221.1 205 53.7
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.2e-54 215.3 210 53.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.3e-52 210.7 170 61.2
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.3e-48 196.1 148 60.1
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.2e-47 194.1 204 48.5
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.6e-47 192.6 206 48.5
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.7e-42 176.4 190 47.4
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 6.6e-41 171.8 141 56.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.5e-40 170.6 237 42.6
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 5.6e-40 168.7 227 41.4
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 4.1e-35 152.5 241 39.8
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-33 147.5 168 45.8
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.6e-33 144.8 230 39.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 6.2e-31 138.7 231 39.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 8.1e-31 138.3 250 34.4
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.1e-30 136.3 227 35.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 6.8e-30 135.2 234 37.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.4e-29 132.9 235 35.7
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.4e-29 132.5 229 37.1
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.7e-28 130.6 228 36.8
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.7e-28 130.6 227 37.9
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.2e-28 130.2 242 36.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.9e-28 129.8 236 36.4
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.9e-28 129.8 229 36.2
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 4.9e-28 129.0 225 36.9
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.9e-28 129.0 233 36.1
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 4.9e-28 129.0 227 37.0
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.4e-28 128.6 231 35.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.3e-28 128.3 218 37.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 8.3e-28 128.3 231 36.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.3e-28 128.3 227 34.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 8.3e-28 128.3 230 37.0
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-27 127.9 223 36.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-27 127.5 221 36.7
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.4e-27 127.5 232 35.8
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-27 127.1 233 35.6
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.9e-27 127.1 231 36.4
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.4e-27 126.7 228 35.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.4e-27 126.7 230 35.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.4e-27 126.7 225 37.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.4e-27 126.7 223 37.7
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.1e-27 125.9 231 35.9
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 7.1e-27 125.2 234 34.6
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.2e-27 124.8 227 35.7
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.2e-27 124.8 233 36.1
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.2e-26 124.4 234 35.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.2e-26 124.4 233 36.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.6e-26 124.0 228 36.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.6e-26 124.0 233 36.1
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.1e-26 123.6 233 36.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.1e-26 123.6 228 36.4
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.1e-26 123.6 230 36.5
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.7e-26 123.2 234 34.2
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.7e-26 123.2 233 34.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.7e-26 123.2 230 34.3
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 3.5e-26 122.9 228 35.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 4.6e-26 122.5 236 35.2
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.6e-26 122.5 231 35.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.6e-26 122.5 238 34.5
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.0e-26 122.1 227 35.2
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 6.0e-26 122.1 232 34.5
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.8e-26 121.7 234 34.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 7.8e-26 121.7 219 37.4
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.0e-25 121.3 240 33.8
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.0e-25 121.3 258 33.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.0e-25 121.3 219 34.2
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.0e-25 121.3 227 34.8
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.3e-25 120.9 225 34.7
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.3e-25 120.9 229 34.9
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.3e-25 120.9 225 34.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.3e-25 120.9 228 36.4
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.3e-25 120.9 222 34.2
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.3e-25 120.2 230 35.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-25 120.2 227 34.4
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.3e-25 120.2 231 34.2
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.0e-25 119.8 234 36.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.0e-25 119.8 250 32.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.0e-25 119.8 226 34.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.0e-25 119.8 226 34.5
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.0e-25 119.8 238 34.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.9e-25 119.4 222 34.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 5.1e-25 119.0 245 35.5
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.1e-25 119.0 225 34.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 36.5
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 33.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 33.8
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 33.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 33.8
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 34.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 6.6e-25 118.6 222 34.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.1e-24 117.9 228 33.8
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.1e-24 117.9 225 34.2
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-24 117.9 214 36.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.5e-24 117.5 244 34.8
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.5e-24 117.5 235 34.9
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.9e-24 117.1 234 35.9
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.9e-24 117.1 230 33.9
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-24 117.1 233 34.3
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.9e-24 117.1 232 34.5
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.5e-24 116.7 232 34.5
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.5e-24 116.7 232 34.5
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 3.3e-24 116.3 228 35.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 3.3e-24 116.3 235 32.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.3e-24 116.3 226 35.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 5.6e-24 115.5 228 35.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 5.6e-24 115.5 230 34.3
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 5.6e-24 115.5 242 33.9
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.3e-24 115.2 225 36.0
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.2e-23 114.4 237 34.6
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.2e-23 114.4 237 32.5
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.6e-23 114.0 242 33.5
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.1e-23 113.6 171 39.8
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.8e-23 113.2 226 36.7
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.6e-23 112.8 218 34.9
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 3.6e-23 112.8 235 31.9
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.6e-23 112.8 196 34.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.2e-23 112.1 228 32.9
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.4e-22 110.9 224 34.8
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.8e-22 110.5 228 34.6
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.8e-22 110.5 227 32.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.8e-22 110.5 230 31.7
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.4e-22 110.2 230 34.8
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.1e-22 109.8 221 33.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.1e-22 109.8 223 33.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 3.1e-22 109.8 221 32.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.1e-22 109.8 231 32.9
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 5.2e-22 109.0 218 33.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 6.8e-22 108.6 226 34.5
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 6.8e-22 108.6 230 32.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 6.8e-22 108.6 229 33.2
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.0e-21 107.1 222 32.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.0e-21 107.1 234 32.1
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.6e-21 106.7 239 33.1
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 4.4e-21 105.9 209 34.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 7.6e-21 105.1 200 37.5
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 9.9e-21 104.8 136 41.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 9.9e-21 104.8 227 33.0
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.7e-20 104.0 184 35.9
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 4.9e-20 102.4 210 31.9
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 6.4e-20 102.1 207 33.8
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.4e-19 100.9 163 39.3
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.4e-19 100.1 228 31.1
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.4e-19 100.1 59 76.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 5.4e-19 99.0 212 33.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.7e-18 96.7 219 33.3
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 4.6e-18 95.9 287 27.9
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 7.1e-11 72.0 192 32.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.0e-09 68.2 48 58.3
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 3.0e-09 66.6 145 31.7
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 5.6e-08 62.4 45 51.1
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.6e-08 62.4 37 67.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.6e-07 60.8 35 68.6
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.6e-07 60.8 40 62.5
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.1e-07 60.5 45 51.1
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-06 57.0 44 50.0
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.4e-06 57.0 45 51.1
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.4e-06 57.0 45 46.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.0e-06 56.2 31 61.3
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.3e-06 55.8 107 35.5
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 9.0e-06 55.1 31 58.1


User provided reference genes

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