Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 9.2e-148 526.9 279 100.0
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 3.3e-121 438.7 282 85.8
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 7.3e-113 411.0 284 79.6
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 1.9e-76 290.0 303 56.1
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 2.3e-50 203.4 224 58.9
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 4.0e-42 176.0 197 55.8
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 7.8e-38 161.8 241 53.1
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 8.9e-34 148.3 261 42.5
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 4.4e-33 146.0 213 48.8
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 5.7e-33 145.6 262 43.9
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 1.1e-31 141.4 251 45.8
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 1.7e-29 134.0 283 43.5
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 2.3e-29 133.7 286 36.7
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 6.6e-29 132.1 275 36.0
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 4.3e-28 129.4 226 50.9
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 7.3e-28 128.6 254 37.8
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 2.3e-26 123.6 252 41.7
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 1.2e-25 121.3 251 38.6
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 1.3e-24 117.9 267 35.2
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 2.2e-24 117.1 229 37.6
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 2.2e-24 117.1 235 37.0
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 6.4e-24 115.5 240 37.5
Medtr5g008380 Medicago truncatula HOM05D008729 ORTHO05D006541 1.4e-23 114.4 283 36.0
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 1.9e-23 114.0 242 39.3
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 4.1e-23 112.8 267 34.5
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 4.1e-23 112.8 236 41.1
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 5.4e-23 112.5 267 34.5
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 2.0e-22 110.5 260 33.1
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 7.8e-22 108.6 241 35.7
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 1.3e-21 107.8 310 35.2
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 3.0e-21 106.7 240 35.8
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 3.9e-21 106.3 241 36.9
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 8.1e-19 98.6 285 38.6
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 1.4e-18 97.8 317 28.7
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 3.1e-18 96.7 222 34.7
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 2.0e-17 94.0 270 31.1
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 9.9e-17 91.7 218 35.8
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 1.3e-16 91.3 224 34.4
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 2.2e-16 90.5 275 31.3
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 2.9e-16 90.1 209 31.1
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 2.9e-16 90.1 223 35.4
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 6.4e-16 89.0 100 47.0
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 8.3e-16 88.6 240 32.9
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 1.9e-15 87.4 271 29.5
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 3.2e-15 86.7 213 33.8
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 4.1e-15 86.3 227 41.0
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 9.2e-15 85.1 202 35.6
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 1.6e-14 84.3 49 73.5
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 2.7e-14 83.6 249 30.1
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 2.7e-14 83.6 278 29.9
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 4.6e-14 82.8 97 42.3
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 6.0e-14 82.4 241 31.1
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 6.0e-14 82.4 224 32.6
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 1.0e-13 81.6 165 41.8
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.3e-13 81.3 272 28.3
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.7e-13 80.9 220 30.0
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 2.3e-13 80.5 243 30.9
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 5.1e-13 79.3 44 77.3
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.1e-12 78.2 221 32.1
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 1.9e-12 77.4 270 33.7
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 2.5e-12 77.0 48 66.7
Medtr3g463670 Medicago truncatula HOM05D008729 ORTHO05D006541 5.6e-12 75.9 129 43.4
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 1.6e-11 74.3 229 29.3
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 3.6e-11 73.2 301 33.2
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 8.1e-11 72.0 96 39.6
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 1.1e-10 71.6 253 28.9
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 1.8e-10 70.9 231 30.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.8e-10 70.9 231 30.3
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 1.8e-10 70.9 233 29.2
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 2.4e-10 70.5 260 28.1
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 2.4e-10 70.5 171 33.9
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 3.1e-10 70.1 148 33.8
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 3.1e-10 70.1 243 35.8
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 3.1e-10 70.1 151 34.4
Medtr5g066190 Medicago truncatula HOM05D008729 ORTHO05D006541 4.0e-10 69.7 127 42.5
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 5.2e-10 69.3 245 28.6
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 5.2e-10 69.3 219 31.5
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 1.2e-09 68.2 234 28.6
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 1.2e-09 68.2 250 32.4
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 1.2e-09 68.2 229 28.8
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 1.5e-09 67.8 231 29.4
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 2.0e-09 67.4 181 32.6
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 2.6e-09 67.0 242 33.1
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 2.6e-09 67.0 242 26.9
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 2.6e-09 67.0 173 31.2
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 3.4e-09 66.6 111 37.8
VMungo0251G1418 Vigna mungo HOM05D002658 ORTHO05D003000 3.4e-09 66.6 79 55.7
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 7.6e-09 65.5 244 30.3
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 7.6e-09 65.5 109 37.6
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 9.9e-09 65.1 250 33.2
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 1.3e-08 64.7 246 26.4
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 2.2e-08 63.9 256 29.7
FAN17G2546 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.2e-08 63.9 190 31.6
Lj3g0008701 Lotus japonicus HOM05D008729 ORTHO05D006541 2.2e-08 63.9 105 44.8
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 2.2e-08 63.9 142 33.8
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 3.8e-08 63.2 161 32.9
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 3.8e-08 63.2 161 32.9
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 1.4e-07 61.2 93 53.8
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 1.4e-07 61.2 49 51.0
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.9e-07 60.8 42 54.8
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 1.9e-07 60.8 161 32.9
Ciclev10005715m.g Citrus clementina HOM05D008171 ORTHO05D006541 2.4e-07 60.5 181 33.1
VMungo1383G3470 Vigna mungo HOM05D008729 ORTHO05D006541 3.2e-07 60.1 127 37.8
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 5.4e-07 59.3 198 28.3
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.2e-06 58.2 37 59.5
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 2.1e-06 57.4 87 34.5


User provided reference genes

Program Settings