Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.4e-210 736.1 401 100.0
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 9.6e-191 670.2 402 88.1
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.2e-161 573.5 401 82.5
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.2e-161 573.5 403 79.9
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 3.6e-161 572.0 403 80.9
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 6.5e-155 551.2 401 78.3
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-154 550.1 337 84.6
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.3e-152 542.7 335 84.5
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 4.8e-150 535.0 402 74.6
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 6.3e-150 534.6 406 75.4
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 2.0e-148 529.6 405 73.6
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 2.2e-142 509.6 418 72.2
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 4.6e-132 475.3 448 65.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.7e-124 449.5 396 66.9
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.8e-121 439.5 328 69.8
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.1e-120 437.6 333 70.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.4e-120 437.2 393 64.4
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 2.3e-120 436.4 333 68.8
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.1e-120 436.0 324 69.8
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.4e-119 432.2 344 68.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 5.8e-119 431.8 400 61.2
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 6.4e-118 428.3 329 69.3
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.1e-117 427.6 319 69.6
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.1e-117 427.6 392 62.2
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.4e-117 426.4 401 64.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 4.1e-117 425.6 343 66.8
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 5.4e-117 425.2 333 66.7
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.1e-116 423.3 332 66.9
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.0e-115 421.0 331 68.3
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.3e-115 420.6 316 69.0
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.7e-115 420.2 331 66.2
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.0e-115 419.5 334 66.2
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 8.6e-115 417.9 365 62.5
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.5e-114 417.2 344 64.0
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 4.3e-114 415.6 409 62.3
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 7.3e-114 414.8 324 68.8
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.6e-113 413.7 324 66.0
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.8e-113 412.9 335 65.7
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 6.8e-112 408.3 320 65.6
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 8.9e-112 407.9 327 66.4
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.5e-111 407.1 329 64.1
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.5e-111 407.1 340 63.5
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 4.4e-111 405.6 350 63.7
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 5.8e-111 405.2 332 64.8
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 5.8e-111 405.2 412 60.4
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.3e-110 404.1 330 64.8
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 2.9e-110 402.9 325 67.4
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.9e-110 402.9 383 58.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.4e-109 400.6 329 64.4
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.9e-109 400.2 325 64.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 4.1e-109 399.1 405 59.8
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.4e-109 398.7 415 59.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 2.1e-108 396.7 323 64.7
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 6.0e-108 395.2 402 59.7
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.0e-107 394.4 342 61.4
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.0e-107 394.4 416 58.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.7e-107 393.7 330 62.4
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.7e-107 393.7 327 63.9
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.3e-107 393.3 332 62.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 3.9e-107 392.5 345 63.5
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.5e-106 390.6 326 62.3
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.5e-106 390.6 326 62.3
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.5e-106 390.6 322 64.6
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.9e-106 390.2 432 56.5
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.5e-106 389.8 412 55.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.3e-106 389.0 335 61.5
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 4.3e-106 389.0 335 62.7
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 9.6e-106 387.9 330 61.8
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.2e-105 387.5 329 62.0
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.6e-105 387.1 335 62.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.6e-105 387.1 328 62.2
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.6e-105 387.1 398 54.3
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-105 386.7 406 57.1
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.1e-105 386.7 335 63.0
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.8e-105 386.3 335 61.5
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.7e-105 385.6 411 57.4
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.2e-105 385.2 406 57.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.4e-104 384.0 327 63.3
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.8e-104 383.6 356 60.4
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 2.4e-104 383.3 344 62.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.0e-104 382.5 335 61.2
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.2e-103 380.9 332 61.1
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 7.6e-103 378.3 332 62.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 9.9e-103 377.9 372 58.1
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.9e-102 375.6 312 62.5
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.4e-101 374.0 331 61.3
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.4e-101 373.2 290 67.6
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 7.1e-101 371.7 334 62.0
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 7.1e-101 371.7 334 62.3
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.7e-100 369.8 301 63.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 3.5e-100 369.4 396 53.8
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 3.5e-100 369.4 285 68.8
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.6e-100 369.0 413 55.2
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.7e-99 367.1 331 58.9
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.3e-98 362.5 343 58.0
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.6e-97 360.5 286 67.1
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.1e-96 356.3 289 65.4
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 4.5e-95 352.4 293 62.1
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 7.6e-95 351.7 333 58.9
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 7.9e-92 341.7 311 60.8
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 3.0e-91 339.7 331 59.2
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.9e-91 339.3 430 49.8
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.5e-90 336.7 518 45.4
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 6.2e-89 332.0 395 50.4
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.8e-88 330.5 305 60.0
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.7e-86 323.9 350 51.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.9e-85 320.5 300 57.3
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 5.1e-83 312.4 305 55.1
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 7.4e-82 308.5 309 56.0
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.4e-80 303.5 313 54.6
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 9.6e-74 281.6 302 57.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.5e-69 266.9 228 64.0
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 3.7e-65 253.1 226 61.5
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 3.0e-59 233.4 215 59.5
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 9.1e-56 221.9 409 37.7
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 2.0e-55 220.7 325 40.3
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.6e-55 220.3 312 47.4
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.6e-50 203.8 173 65.9
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.7e-47 192.2 138 72.5
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 5.7e-42 176.0 226 49.1
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 5.3e-40 169.5 160 57.5
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.7e-39 165.6 156 59.0
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-38 164.9 220 53.2
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.1e-37 161.8 115 70.4
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 2.5e-37 160.6 382 31.9
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 3.2e-37 160.2 112 75.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 3.2e-37 160.2 269 38.7
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.0e-34 151.0 340 31.2
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 4.1e-32 143.3 208 44.2
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 5.2e-27 126.3 98 65.3
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.6e-26 124.0 180 44.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 4.5e-23 113.2 83 67.5
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 6.6e-22 109.4 159 39.6
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-21 108.2 61 86.9
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 9.5e-21 105.5 69 75.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.0e-19 102.1 63 81.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.5e-18 98.2 159 40.3
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.4e-18 97.1 81 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 3.4e-18 97.1 83 60.2
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.9e-17 94.0 61 75.4
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.7e-17 93.6 135 46.7
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.8e-16 91.3 135 44.4
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.8e-16 91.3 63 69.8
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.6e-15 88.2 68 66.2
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 5.9e-15 86.3 66 72.7
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.7e-14 84.7 63 63.5
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 2.3e-14 84.3 408 26.2
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 3.3e-13 80.5 97 48.5
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.3e-11 74.3 91 50.5
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.6e-10 70.9 110 43.6
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 6.4e-09 66.2 36 88.9
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.1e-08 65.5 123 34.1
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 2.3e-06 57.8 58 53.4
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 3.9e-06 57.0 423 23.9


User provided reference genes

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