Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.8e-146 521.9 261 100.0
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 8.6e-140 500.4 261 95.0
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 7.8e-133 477.2 261 89.3
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.7e-127 459.5 261 85.1
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 2.3e-124 449.1 261 82.8
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 2.0e-120 436.0 261 80.1
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.3e-119 433.3 260 80.4
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 4.9e-119 431.4 251 83.3
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.4e-118 429.1 262 79.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 7.1e-118 427.6 259 79.9
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 4.6e-117 424.9 261 77.8
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.4e-113 413.3 249 77.9
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.9e-103 379.0 251 66.9
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 2.9e-103 379.0 249 68.7
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 6.4e-103 377.9 254 67.7
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.4e-102 376.7 248 69.0
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.2e-102 375.6 249 67.9
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 3.2e-102 375.6 254 67.7
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 9.3e-102 374.0 257 67.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.2e-101 373.6 261 66.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.2e-101 373.6 251 66.5
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.2e-101 373.6 252 67.9
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.6e-101 371.7 251 66.5
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.3e-100 370.2 251 64.5
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 2.3e-100 369.4 251 65.3
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.3e-100 369.4 257 63.8
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 3.0e-100 369.0 251 66.5
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-99 366.3 248 67.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 2.5e-99 365.9 242 66.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.3e-99 365.5 248 68.1
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 5.6e-99 364.8 242 66.9
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 5.6e-99 364.8 242 66.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 7.4e-99 364.4 250 67.6
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 7.4e-99 364.4 254 65.7
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.4e-99 364.4 252 63.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 7.4e-99 364.4 250 65.6
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 9.6e-99 364.0 271 63.5
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 9.6e-99 364.0 254 65.7
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 9.6e-99 364.0 250 66.8
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.6e-98 363.2 248 67.7
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 2.1e-98 362.8 243 67.9
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 2.8e-98 362.5 248 66.5
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 3.7e-98 362.1 248 66.1
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 4.8e-98 361.7 240 67.5
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 8.1e-98 360.9 251 63.7
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 1.1e-97 360.5 249 67.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 1.1e-97 360.5 243 67.9
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.4e-97 360.1 248 67.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.4e-97 360.1 249 65.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 1.8e-97 359.8 247 67.2
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.4e-97 359.4 251 65.7
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 2.4e-97 359.4 245 67.3
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.1e-97 359.0 246 66.7
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.0e-97 358.6 249 65.9
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.0e-97 358.6 249 66.3
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 5.3e-97 358.2 252 65.5
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 6.9e-97 357.8 252 65.1
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 6.9e-97 357.8 250 65.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.2e-96 357.1 240 67.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.5e-96 356.7 251 65.3
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 2.0e-96 356.3 246 65.4
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.6e-96 355.9 246 65.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 5.8e-96 354.8 240 67.5
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 5.8e-96 354.8 252 65.9
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 7.6e-96 354.4 250 65.6
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.0e-95 354.0 248 62.5
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.3e-95 353.6 243 65.4
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.5e-95 351.3 249 65.9
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 6.5e-95 351.3 265 63.0
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 3.2e-94 349.0 249 65.5
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.2e-94 349.0 249 65.5
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 5.5e-94 348.2 252 63.1
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 5.5e-94 348.2 283 58.0
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 7.1e-94 347.8 248 63.7
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 9.3e-94 347.4 253 62.5
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 1.2e-93 347.1 251 63.7
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.5e-93 345.5 261 62.1
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.6e-93 345.1 247 62.8
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.6e-93 345.1 277 59.6
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 6.0e-93 344.7 260 59.2
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.0e-93 344.7 258 62.8
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 7.9e-93 344.4 222 69.4
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.0e-92 344.0 252 65.5
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.3e-92 342.8 252 62.7
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 3.9e-92 342.0 259 61.4
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 5.1e-92 341.7 250 63.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 6.7e-92 341.3 249 61.4
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.5e-91 339.3 258 60.9
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 3.3e-91 339.0 230 65.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 9.6e-91 337.4 265 60.4
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.6e-90 336.7 254 60.6
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 2.1e-90 336.3 250 62.0
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-90 335.9 250 62.0
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.8e-90 335.9 244 64.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.8e-90 335.9 244 64.3
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.7e-90 335.5 250 61.6
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 6.3e-90 334.7 241 63.5
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.8e-89 333.2 250 62.0
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.8e-89 333.2 250 61.6
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 5.3e-89 331.6 239 61.1
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.0e-88 329.7 257 60.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 4.5e-88 328.6 253 57.3
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.3e-87 327.0 249 62.2
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 3.8e-87 325.5 302 54.0
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 3.8e-87 325.5 248 60.9
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 8.4e-87 324.3 230 64.3
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.6e-85 320.1 249 58.2
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 2.1e-85 319.7 274 56.6
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.2e-82 309.7 195 71.8
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 4.8e-82 308.5 252 60.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.4e-81 307.0 217 64.1
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 4.3e-75 285.4 184 71.2
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.4e-75 284.6 198 65.7
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 4.8e-74 282.0 169 74.0
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 3.1e-73 279.3 201 61.2
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 6.9e-73 278.1 250 52.4
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 9.1e-73 277.7 201 61.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.2e-70 269.2 249 51.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 7.2e-70 268.1 249 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.1e-69 266.5 226 54.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.4e-68 263.8 240 53.8
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.7e-66 255.8 236 50.4
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.4e-65 253.8 193 58.5
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.7e-59 231.9 180 57.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.4e-57 227.3 244 48.8
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 3.1e-57 226.1 227 50.2
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.3e-55 220.7 171 58.5
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 6.5e-55 218.4 129 75.2
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 5.5e-54 215.3 213 50.7
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 3.1e-49 199.5 252 44.0
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.6e-48 197.2 132 68.2
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 3.5e-48 196.1 144 62.5
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 4.2e-46 189.1 140 60.0
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 7.2e-46 188.3 221 42.1
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 8.0e-45 184.9 126 66.7
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 8.8e-44 181.4 287 38.0
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.1e-41 174.5 128 60.9
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.4e-41 174.1 206 47.1
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 2.0e-40 170.2 116 62.1
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 2.0e-40 170.2 269 35.7
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.1e-37 158.7 116 61.2
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.4e-25 120.9 99 53.5
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.0e-23 113.2 79 65.8
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 6.2e-21 105.5 65 69.2
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.4e-19 99.8 98 48.0
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.9e-18 96.7 58 75.9
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 8.1e-13 78.6 70 47.1
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 9.9e-11 71.6 189 30.2


User provided reference genes

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