Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G035900 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 9.5e-252 873.2 507 100.0
VMungo1383G2482 Vigna mungo HOM05D003021 ORTHO05D002235 1.2e-169 600.5 521 74.3
Glyma.18G264100 Glycine max HOM05D003021 ORTHO05D002235 3.8e-144 515.8 559 63.0
Glyma.08G241800 Glycine max HOM05D003021 ORTHO05D002235 1.7e-120 437.2 591 55.2
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 8.4e-75 285.4 592 44.9
Glyma.19G027500 Glycine max HOM05D003021 ORTHO05D002235 4.3e-71 273.1 583 43.6
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 6.5e-59 232.6 549 36.8
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 2.5e-58 230.7 537 45.8
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 7.9e-57 225.7 616 38.0
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 1.4e-53 214.9 586 38.6
Lalb_Chr10g0093201 Lupinus albus HOM05D003021 ORTHO05D002235 1.0e-51 208.8 519 36.4
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 2.5e-50 204.1 579 40.2
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 5.7e-47 193.0 531 39.2
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 1.6e-41 174.9 617 31.8
Psat3g200600 Pisum sativum HOM05D003021 ORTHO05D002235 6.1e-41 172.9 518 33.8
Psat3g200560 Pisum sativum HOM05D003021 ORTHO05D002235 8.3e-38 162.5 520 35.4
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 1.1e-37 162.2 628 36.1
Psat6g146680 Pisum sativum HOM05D003021 ORTHO05D002235 3.8e-35 153.7 598 36.6
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 1.9e-34 151.4 619 33.9
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 6.1e-33 146.4 716 31.6
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 8.8e-32 142.5 318 38.7
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 2.2e-30 137.9 592 31.2
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 4.1e-29 133.7 553 32.0
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 1.6e-28 131.7 551 29.4
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 5.0e-27 126.7 547 28.3
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.6e-27 126.3 583 28.0
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 9.5e-26 122.5 527 28.3
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 1.6e-25 121.7 528 29.7
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 3.6e-25 120.6 527 28.5
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 1.8e-24 118.2 541 32.0
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 3.0e-24 117.5 598 27.4
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 5.2e-24 116.7 566 29.5
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 3.4e-23 114.0 605 29.4
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 4.9e-22 110.2 513 27.1
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 6.4e-22 109.8 572 28.8
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 8.3e-22 109.4 561 28.2
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 8.3e-22 109.4 561 29.6
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 7.0e-21 106.3 527 28.1
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 1.6e-20 105.1 513 28.8
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 3.5e-20 104.0 295 35.9
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 5.9e-20 103.2 256 36.7
TPR.G26173 Trifolium pratense HOM05D003021 ORTHO05D002235 1.0e-19 102.4 206 43.7
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 3.0e-19 100.9 583 27.1
Ca_13741_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 1.1e-18 99.0 346 41.0
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 4.3e-18 97.1 527 27.1
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 5.6e-18 96.7 554 27.3
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.6e-17 94.0 524 27.3
Ca_29904_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 8.0e-17 92.8 198 41.4
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.4e-16 92.0 614 26.5
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.8e-16 91.7 571 27.1
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 1.8e-16 91.7 513 27.3
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 5.2e-16 90.1 589 25.6
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 1.5e-15 88.6 287 32.4
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 2.0e-15 88.2 562 27.4
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 3.4e-15 87.4 289 32.5
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 4.4e-15 87.0 568 26.9
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 3.7e-14 84.0 538 25.1
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 8.3e-14 82.8 513 25.7
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 3.2e-13 80.9 543 26.9
Sp7g02590 Schrenkiella parvula HOM05D003021 ORTHO05D002235 1.2e-12 79.0 516 27.5
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 2.0e-12 78.2 538 26.4
Aa31LG9G16610 Aethionema arabicum HOM05D003021 ORTHO05D002235 4.6e-12 77.0 501 26.3
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 1.3e-11 75.5 574 24.2
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 2.3e-11 74.7 209 34.4
Aa31LG2G3990 Aethionema arabicum HOM05D003021 ORTHO05D002235 3.9e-11 73.9 489 26.4
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 5.0e-11 73.6 554 25.6
Thhalv10013405m.g Eutrema salsugineum HOM05D009950 ORTHO05D002235 6.6e-11 73.2 519 26.2
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 6.6e-11 73.2 524 25.6
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 8.6e-11 72.8 566 29.5
Thhalv10027728m.g Eutrema salsugineum HOM05D003021 ORTHO05D002235 8.6e-11 72.8 523 27.0
PSO017G1133 Papaver somniferum HOM05D003021 ORTHO05D002235 1.1e-10 72.4 536 25.9
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 1.5e-10 72.0 516 26.7
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.9e-10 71.6 47 76.6
BcaB01g05057 Brassica carinata HOM05D009950 ORTHO05D002235 2.5e-10 71.2 527 26.2
BolC3t13309H Brassica oleracea HOM05D009950 ORTHO05D002235 2.5e-10 71.2 527 26.2
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 4.3e-10 70.5 528 26.7
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 5.6e-10 70.1 536 25.2
MSTRG.15459 Avicennia marina HOM05D003021 ORTHO05D002235 5.6e-10 70.1 101 43.6
C03p08120 Brassica napus HOM05D009950 ORTHO05D002235 5.6e-10 70.1 527 26.6
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 5.6e-10 70.1 507 26.6
CAN.G206.199 Capsicum annuum HOM05D003021 ORTHO05D002235 7.3e-10 69.7 68 52.9
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 7.3e-10 69.7 541 25.0
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 7.3e-10 69.7 46 71.7
AT5G39380 Arabidopsis thaliana HOM05D003021 ORTHO05D002235 1.6e-09 68.6 515 25.8
CAN.G606.81 Capsicum annuum HOM05D003021 ORTHO05D002235 1.6e-09 68.6 68 52.9
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 1.6e-09 68.6 62 54.8
Gohir.A09G011600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 2.8e-09 67.8 490 25.1
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 3.6e-09 67.4 48 72.9
Prupe.5G200000 Prunus persica HOM05D003021 ORTHO05D002235 3.6e-09 67.4 90 45.6
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 4.7e-09 67.0 58 58.6
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 4.7e-09 67.0 48 70.8
CAN.G411.99 Capsicum annuum HOM05D003021 ORTHO05D002235 6.2e-09 66.6 68 51.5
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.2e-09 66.6 47 72.3
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 6.2e-09 66.6 390 27.2
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 1.1e-08 65.9 84 47.6
Gohir.D09G010600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.4e-08 65.5 480 25.8
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 1.8e-08 65.1 92 43.5
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.8e-08 65.1 47 70.2
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 1.8e-08 65.1 45 68.9
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 1.8e-08 65.1 45 68.9
CAN.G411.102 Capsicum annuum HOM05D003021 ORTHO05D002235 2.3e-08 64.7 55 60.0
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 2.3e-08 64.7 47 70.2
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 3.1e-08 64.3 64 56.2
Sed0023229 Sechium edule HOM05D003021 ORTHO05D002235 3.1e-08 64.3 89 48.3
CAN.G1627.2 Capsicum annuum HOM05D003021 ORTHO05D002235 4.0e-08 63.9 279 32.3
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 5.2e-08 63.5 99 45.5
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 5.2e-08 63.5 613 28.7
CAN.G411.105 Capsicum annuum HOM05D003021 ORTHO05D002235 8.9e-08 62.8 55 58.2
C04p45710 Brassica napus HOM05D003021 ORTHO05D002235 1.2e-07 62.4 501 25.9
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.2e-07 62.4 241 30.7
CARHR275010 Cardamine hirsuta HOM05D009040 ORTHO05D002235 1.2e-07 62.4 82 46.3
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 1.2e-07 62.4 312 27.2
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 2.0e-07 61.6 312 27.2
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 2.6e-07 61.2 230 31.3
Psat4g048880 Pisum sativum HOM05D014856 ORTHO05D002235 2.6e-07 61.2 85 42.4
Gorai.006G012200 Gossypium raimondii HOM05D003021 ORTHO05D002235 3.4e-07 60.8 479 25.3
Sc10g0003280 Simmondsia chinensis HOM05D003021 ORTHO05D002235 3.4e-07 60.8 538 26.2
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 4.4e-07 60.5 565 25.5
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.4e-07 60.5 307 29.3
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 4.4e-07 60.5 50 62.0
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 4.4e-07 60.5 540 30.0
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 4.4e-07 60.5 171 35.7
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 7.5e-07 59.7 47 66.0
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 7.5e-07 59.7 519 24.7
Peaxi162Scf00166g00071 Petunia axillaris HOM05D003021 ORTHO05D002235 9.8e-07 59.3 251 29.1
AT5G15430 Arabidopsis thaliana HOM05D009950 ORTHO05D002235 1.3e-06 58.9 504 24.2
Duzib205G0780 Durio zibethinus HOM05D017748 ORTHO05D020503 1.3e-06 58.9 64 48.4
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.7e-06 58.5 46 65.2
BolC4t26155H Brassica oleracea HOM05D003021 ORTHO05D002235 2.2e-06 58.2 501 25.7
Nitab4.5_0000565g0110 Nicotiana tabacum HOM05D003021 ORTHO05D002235 2.2e-06 58.2 237 29.5
A03p07130 Brassica napus HOM05D009950 ORTHO05D002235 3.7e-06 57.4 510 24.3
C09p69010 Brassica napus HOM05D009040 ORTHO05D002235 3.7e-06 57.4 73 47.9
BolC9t59646H Brassica oleracea HOM05D009040 ORTHO05D002235 3.7e-06 57.4 73 47.9
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 3.7e-06 57.4 265 29.1
Sed0006399 Sechium edule HOM05D003021 ORTHO05D002235 3.7e-06 57.4 115 35.7
BolC3t12928H Brassica oleracea HOM05D009040 ORTHO05D002235 4.9e-06 57.0 79 48.1
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 4.9e-06 57.0 550 24.5
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 4.9e-06 57.0 660 23.9
Ah.02g113870 Amaranthus hybridus HOM05D003021 ORTHO05D002235 6.4e-06 56.6 127 38.6
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 6.4e-06 56.6 260 27.7
THA.LOC104802964 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 6.4e-06 56.6 510 25.5
AL6G26280 Arabidopsis lyrata HOM05D009950 ORTHO05D002235 8.3e-06 56.2 512 24.0


User provided reference genes

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