Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 3.6e-43 177.9 95 100.0
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 4.7e-35 151.0 94 83.0
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 3.9e-34 147.9 94 80.9
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 2.2e-29 132.1 92 71.7
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 6.1e-27 124.0 94 67.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 8.0e-27 123.6 87 69.0
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.0e-27 123.6 89 69.7
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.8e-26 122.5 93 69.9
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.8e-26 122.5 93 69.9
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 1.8e-26 122.5 87 67.8
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 1.8e-26 122.5 87 67.8
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 1.8e-26 122.5 87 67.8
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.7e-26 120.6 85 70.6
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 6.7e-26 120.6 84 73.8
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 8.8e-26 120.2 86 68.6
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 8.8e-26 120.2 89 66.3
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 8.8e-26 120.2 89 68.5
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 8.8e-26 120.2 85 68.2
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 1.5e-25 119.4 85 71.8
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 85 68.2
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.0e-25 119.0 85 69.4
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.0e-25 119.0 85 70.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 3.3e-25 118.2 89 65.2
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.3e-25 118.2 85 67.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 3.3e-25 118.2 90 66.7
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 4.4e-25 117.9 91 63.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.7e-25 117.5 87 69.0
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 7.5e-25 117.1 88 64.8
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 9.7e-25 116.7 86 65.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 9.7e-25 116.7 85 67.1
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.3e-24 116.3 89 62.9
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.3e-24 116.3 89 68.5
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 63.3
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 3.7e-24 114.8 84 69.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.8e-24 114.4 83 69.9
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.3e-24 114.0 90 62.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.3e-24 114.0 89 66.3
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 8.2e-24 113.6 90 65.6
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 8.2e-24 113.6 90 63.3
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.1e-23 113.2 85 67.1
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.1e-23 113.2 83 68.7
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.4e-23 112.8 89 61.8
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-23 112.8 90 62.2
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.4e-23 112.8 90 66.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.8e-23 112.5 90 64.4
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.8e-23 112.5 91 60.4
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.8e-23 112.5 88 62.5
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 3.1e-23 111.7 86 60.5
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 5.3e-23 110.9 89 60.7
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 5.3e-23 110.9 89 60.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.0e-23 110.5 90 62.2
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 9.1e-23 110.2 83 67.5
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 9.1e-23 110.2 86 62.8
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.1e-23 110.2 89 59.6
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.1e-23 110.2 89 59.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 9.1e-23 110.2 86 60.5
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.2e-22 109.8 90 58.9
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.6e-22 109.4 89 59.6
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.0e-22 109.0 83 63.9
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.0e-22 109.0 89 58.4
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.5e-22 108.2 82 64.6
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.5e-22 108.2 86 57.0
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 3.5e-22 108.2 82 68.3
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.5e-22 108.2 88 61.4
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.5e-22 107.8 84 64.3
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.7e-22 107.1 91 57.1
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 7.7e-22 107.1 88 61.4
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 7.7e-22 107.1 83 63.9
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 7.7e-22 107.1 81 66.7
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.3e-21 106.3 85 60.0
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-21 106.3 87 57.5
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-21 106.3 87 57.5
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.3e-21 106.3 85 61.2
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.7e-21 105.9 89 55.1
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.7e-21 105.9 87 57.5
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.7e-21 105.9 85 65.9
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 2.2e-21 105.5 88 61.4
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.2e-21 105.5 88 59.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.9e-21 105.1 89 57.3
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 3.8e-21 104.8 89 57.3
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 5.0e-21 104.4 89 57.3
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 6.5e-21 104.0 86 58.1
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 6.5e-21 104.0 86 58.1
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.9e-20 102.4 87 57.5
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.5e-20 102.1 87 57.5
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.5e-20 102.1 81 61.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.6e-19 99.4 87 56.3
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.6e-19 99.4 87 55.2
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.1e-19 97.4 85 56.5
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 8.0e-19 97.1 75 64.0
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.4e-18 96.3 75 65.3
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 1.8e-18 95.9 89 55.1
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.8e-18 95.9 90 51.1
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.3e-18 95.5 79 64.6
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.0e-18 95.1 83 56.6
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.0e-18 95.1 90 46.7
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-18 94.7 81 55.6
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 4.0e-18 94.7 81 55.6
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 5.2e-18 94.4 69 68.1
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 8.8e-18 93.6 63 73.0
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.0e-17 92.4 83 53.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.6e-17 92.0 79 58.2
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.4e-17 91.7 86 55.8
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 5.7e-17 90.9 89 47.2
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 7.5e-17 90.5 80 53.8
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 7.5e-17 90.5 81 54.3
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.3e-16 89.7 65 69.2
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-16 89.7 80 53.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-16 89.7 80 53.8
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.3e-16 89.7 80 53.8
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.7e-16 89.4 74 60.8
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.7e-16 89.4 83 49.4
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.7e-16 89.4 83 49.4
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 2.8e-16 88.6 83 49.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-16 88.6 80 52.5
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.8e-16 88.6 80 52.5
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-16 88.2 82 54.9
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 6.3e-16 87.4 80 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 6.3e-16 87.4 80 51.2
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 6.3e-16 87.4 80 51.2
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 8.3e-16 87.0 80 57.5
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.4e-15 86.3 80 51.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.4e-15 86.3 80 51.2
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.4e-15 85.5 80 51.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 4.1e-15 84.7 80 51.2
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.1e-15 84.7 69 60.9
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 5.4e-15 84.3 80 51.2
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 5.4e-15 84.3 80 50.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-14 82.8 80 50.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-14 82.8 79 49.4
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-14 82.8 80 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-14 82.8 80 50.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.7e-14 82.0 88 46.6
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.5e-14 81.6 87 44.8
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 2.3e-13 79.0 75 53.3
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 2.9e-13 78.6 82 46.3
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.5e-12 75.5 60 61.7
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 9.5e-12 73.6 58 67.2
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-11 72.8 73 49.3
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-11 72.8 73 49.3
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-11 72.4 73 49.3
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 4.7e-11 71.2 73 47.9
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 4.7e-11 71.2 86 47.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 3.0e-10 68.6 83 47.0
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.8e-09 63.5 66 47.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.8e-08 62.0 86 39.5
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.1e-07 60.1 76 43.4
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.4e-07 59.7 63 52.4
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 5.9e-06 54.3 38 68.4


User provided reference genes

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