Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 1.9e-203 712.6 447 100.0
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 6.4e-159 564.7 444 81.3
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 4.3e-139 498.8 405 71.6
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.3e-135 487.3 404 72.0
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 2.6e-104 383.3 416 58.9
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.8e-82 310.1 416 54.3
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 6.3e-82 308.9 414 51.7
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 2.6e-80 303.5 413 53.0
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 3.5e-80 303.1 436 49.1
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 2.9e-79 300.1 421 56.1
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 8.0e-77 292.0 415 50.1
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 2.1e-53 214.2 391 40.2
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 5.2e-52 209.5 442 40.0
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 5.2e-52 209.5 442 38.5
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 3.7e-50 203.4 400 39.0
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 2.4e-49 200.7 403 36.7
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 3.5e-48 196.8 338 40.5
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 1.3e-47 194.9 438 39.0
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 8.6e-47 192.2 361 40.2
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.1e-46 191.8 363 41.0
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 2.5e-46 190.7 450 36.2
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.2e-45 188.3 377 39.0
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 1.6e-45 188.0 367 40.1
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 3.6e-45 186.8 442 37.6
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 6.1e-45 186.0 443 36.3
Ca_06819_v3 Cicer arietinum L. HOM05D005710 ORTHO05D004657 1.8e-44 184.5 262 50.0
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.3e-44 184.1 349 39.0
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 1.2e-43 181.8 408 36.0
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 9.8e-43 178.7 448 35.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 1.3e-42 178.3 417 36.5
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.3e-42 178.3 417 38.6
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.2e-42 177.6 413 35.4
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 3.7e-42 176.8 412 36.9
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 3.7e-42 176.8 357 39.5
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.4e-41 174.9 309 40.8
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.9e-41 174.5 448 35.7
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 7.0e-41 172.6 355 37.5
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.2e-40 171.8 412 35.0
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.7e-39 167.9 346 37.6
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 2.3e-39 167.5 433 34.4
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 5.0e-39 166.4 363 38.8
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.9e-38 164.5 285 43.9
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.9e-38 164.5 285 43.9
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 5.6e-38 162.9 374 37.4
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 3.6e-37 160.2 376 34.3
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 4.0e-36 156.8 363 39.1
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 8.9e-36 155.6 271 43.2
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.5e-35 154.8 414 34.3
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 7.5e-35 152.5 388 35.1
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.3e-34 151.8 357 39.2
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 3.7e-34 150.2 419 33.7
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 4.9e-34 149.8 383 35.8
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 8.3e-34 149.1 412 34.7
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 1.2e-32 145.2 406 33.5
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 1.6e-32 144.8 427 35.1
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 3.5e-32 143.7 396 33.1
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 7.8e-32 142.5 340 35.6
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.0e-31 142.1 357 36.7
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 6.6e-31 139.4 381 32.5
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 1.1e-30 138.7 284 38.4
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 2.5e-30 137.5 434 31.6
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.3e-30 137.1 339 36.6
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 9.5e-30 135.6 270 38.1
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 2.1e-29 134.4 391 34.3
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 3.6e-29 133.7 409 33.0
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 4.7e-29 133.3 345 32.2
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 6.2e-29 132.9 171 45.0
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 8.1e-29 132.5 348 33.9
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 1.1e-28 132.1 299 37.1
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.8e-28 131.3 238 40.3
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.8e-28 131.3 377 34.7
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 8.9e-28 129.0 369 33.9
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.2e-27 128.6 245 36.3
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 7.6e-27 125.9 216 38.4
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 7.6e-27 125.9 295 35.3
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.7e-26 124.8 361 33.2
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.2e-26 124.4 274 38.0
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 2.9e-26 124.0 340 33.2
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 8.3e-26 122.5 296 33.1
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.1e-25 122.1 434 33.4
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.4e-25 121.7 280 36.4
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 1.9e-25 121.3 319 36.4
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.9e-25 121.3 325 34.2
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 9.2e-25 119.0 360 33.9
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 9.2e-25 119.0 341 35.2
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 2.1e-24 117.9 311 36.3
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 2.1e-24 117.9 311 36.3
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 4.6e-24 116.7 429 32.2
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 3.0e-23 114.0 317 35.0
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 8.6e-23 112.5 204 41.2
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.1e-22 112.1 311 35.4
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.1e-22 112.1 311 35.4
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 1.9e-22 111.3 311 35.0
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 1.9e-22 111.3 427 29.0
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 1.9e-22 111.3 427 29.0
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 7.3e-22 109.4 213 38.0
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.1e-21 107.8 301 34.2
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 1.8e-20 104.8 321 33.0
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 2.4e-20 104.4 303 35.0
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 2.4e-20 104.4 386 31.6
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 3.1e-20 104.0 228 38.6
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 1.2e-19 102.1 364 33.5
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.5e-19 101.7 233 36.9
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.5e-19 101.7 233 36.9
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 7.6e-19 99.4 196 39.3
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 4.9e-18 96.7 293 30.7
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 3.2e-17 94.0 409 28.1
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 3.2e-17 94.0 102 52.9
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 2.7e-16 90.9 188 34.0
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 2.7e-16 90.9 267 33.0
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 4.6e-16 90.1 188 37.8
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 5.6e-14 83.2 108 51.9
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.0e-11 74.7 84 48.8
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 9.9e-11 72.4 101 41.6
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 3.2e-09 67.4 292 29.5
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 9.3e-09 65.9 124 41.9
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.0e-07 62.4 270 32.6
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 1.9e-06 58.2 60 50.0
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 3.3e-06 57.4 99 38.4
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.3e-06 57.0 99 36.4
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 4.3e-06 57.0 99 36.4
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.6e-06 56.6 105 34.3
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 7.3e-06 56.2 108 33.3
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 7.3e-06 56.2 99 37.4
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 7.3e-06 56.2 99 36.4
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 7.3e-06 56.2 99 36.4
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 9.6e-06 55.8 99 37.4
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 9.6e-06 55.8 103 33.0


User provided reference genes

Program Settings