Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 0.0e+00 1095.5 612 100.0
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 9.1e-249 863.6 615 82.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 4.1e-209 731.9 648 70.2
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.6e-208 729.9 618 72.5
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.0e-208 729.6 500 84.2
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.5e-198 696.8 616 72.2
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 6.2e-189 664.8 711 63.2
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.1e-188 664.1 625 68.3
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.5e-187 660.2 711 62.7
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.4e-180 636.3 498 77.7
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 5.6e-166 588.6 620 59.2
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 3.5e-160 569.3 644 58.2
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.3e-159 566.6 620 58.9
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.1e-158 564.3 620 59.7
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.3e-158 562.4 635 58.9
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.4e-156 557.4 636 56.1
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.5e-155 553.9 632 55.7
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 4.2e-153 545.8 625 57.1
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 2.1e-152 543.5 625 55.2
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 7.9e-152 541.6 622 55.0
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 2.3e-151 540.0 646 54.3
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 6.7e-151 538.5 622 54.3
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.1e-150 537.7 643 53.3
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.5e-150 537.3 620 57.7
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 3.3e-150 536.2 697 52.1
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.6e-149 533.9 642 53.1
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.2e-147 527.7 643 52.9
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.4e-147 526.2 634 56.2
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.5e-147 525.8 617 54.1
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 8.5e-146 521.5 648 54.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 5.1e-143 512.3 617 52.0
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.1e-143 512.3 622 54.3
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.8e-141 506.5 651 54.2
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.1e-140 502.7 622 53.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 2.0e-139 500.4 585 55.0
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 2.5e-137 493.4 555 55.1
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 7.9e-136 488.4 497 59.0
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.5e-134 484.2 628 51.8
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 5.7e-134 482.3 635 51.7
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 2.2e-130 470.3 430 70.5
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.4e-129 467.6 504 56.9
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.0e-127 461.5 620 48.4
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.5e-126 457.6 492 60.6
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 5.7e-126 455.7 505 59.6
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 7.4e-126 455.3 627 49.0
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 3.1e-124 449.9 627 48.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 4.1e-124 449.5 629 49.4
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 3.5e-123 446.4 596 49.2
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 2.5e-121 440.3 626 49.2
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.5e-121 440.3 629 48.8
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 3.2e-121 439.9 626 48.9
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 9.4e-121 438.3 634 52.7
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.0e-119 434.9 640 48.3
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.3e-119 433.7 631 48.5
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 3.0e-119 433.3 628 47.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 4.0e-119 433.0 632 53.2
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 4.0e-119 433.0 622 49.2
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.0e-118 430.6 442 58.6
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 7.5e-118 428.7 644 47.2
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.3e-117 427.9 639 46.2
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 3.1e-116 423.3 503 55.1
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.5e-115 419.5 585 49.9
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.7e-114 417.5 603 47.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 8.5e-114 415.2 552 50.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.1e-113 414.8 501 52.9
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.9e-113 414.1 552 50.2
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 9.4e-113 411.8 591 49.2
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.6e-112 411.0 552 49.6
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.6e-112 411.0 500 52.2
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.6e-112 411.0 657 44.1
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.7e-112 410.2 554 49.3
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.7e-112 410.2 554 49.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 4.7e-112 409.5 688 44.6
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 8.0e-112 408.7 555 49.4
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.3e-111 407.1 627 46.6
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.2e-109 400.6 595 47.1
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 2.8e-109 400.2 540 49.1
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 8.3e-109 398.7 742 46.2
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.4e-108 397.9 247 84.6
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.8e-108 397.5 609 45.2
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 7.0e-108 395.6 601 45.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 9.1e-108 395.2 585 46.8
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 2.7e-107 393.7 710 43.2
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.7e-106 391.0 648 43.4
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.8e-103 380.9 610 44.4
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.8e-103 380.9 503 52.9
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 2.8e-101 373.6 616 43.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 7.0e-100 369.0 682 40.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.6e-99 367.9 630 44.0
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 7.8e-99 365.5 488 49.4
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.3e-98 364.8 502 55.2
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.4e-95 354.8 619 42.0
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.3e-95 354.0 416 53.1
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 9.8e-94 348.6 495 48.1
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.3e-90 338.2 590 42.9
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.3e-85 321.6 581 41.0
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.1e-81 308.5 464 45.0
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.8e-78 296.2 436 46.6
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.8e-78 296.2 436 46.6
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 5.1e-74 283.1 590 36.6
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 3.1e-71 273.9 405 49.9
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.2e-69 267.7 236 64.4
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.8e-69 266.9 258 58.9
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.0e-62 244.6 210 65.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 6.4e-61 239.6 291 49.1
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.8e-56 224.2 212 66.0
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.8e-56 224.2 415 41.2
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 6.0e-51 206.5 320 41.9
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.5e-49 201.8 414 39.9
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.1e-40 171.4 211 52.1
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 4.0e-39 167.2 137 64.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.8e-37 160.6 129 63.6
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 8.4e-37 159.5 138 68.8
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 8.4e-37 159.5 157 58.6
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 6.0e-35 153.3 131 64.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 3.0e-34 151.0 131 64.1
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.7e-32 144.1 283 41.3
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 8.2e-32 142.9 265 41.9
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.4e-20 105.5 143 46.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 2.0e-17 95.1 166 45.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 7.4e-17 93.2 334 29.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 4.8e-16 90.5 284 30.6
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 2.0e-14 85.1 70 62.9
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 4.2e-12 77.4 70 60.0
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.3e-09 67.8 144 37.5
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 2.8e-08 64.7 121 35.5


User provided reference genes

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