Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.3e-121 438.3 214 100.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 4.8e-112 407.9 214 92.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.1e-111 405.2 214 91.1
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-110 403.3 214 90.7
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.6e-110 402.1 214 89.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 6.4e-109 397.5 214 89.7
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.2e-107 393.3 214 88.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 3.7e-104 381.7 210 87.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.7e-101 372.9 213 84.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.1e-99 365.9 210 82.9
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 6.0e-99 364.4 213 80.3
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.8e-98 362.8 213 79.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 4.3e-97 358.2 210 81.0
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.1e-95 353.6 213 78.9
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.5e-93 344.4 215 75.8
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 8.4e-93 344.0 213 76.1
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 5.5e-92 341.3 209 76.1
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.8e-90 336.3 213 77.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 8.7e-90 334.0 205 76.1
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 8.7e-90 334.0 205 76.1
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 3.3e-89 332.0 210 73.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 4.3e-89 331.6 209 76.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.3e-89 331.6 213 73.2
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.3e-89 331.6 205 75.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 9.7e-89 330.5 208 74.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.7e-88 328.6 214 71.0
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 4.8e-88 328.2 205 74.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 6.3e-88 327.8 214 71.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 6.3e-88 327.8 207 72.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.8e-87 326.2 212 70.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.4e-87 325.9 213 70.4
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.1e-87 325.5 211 72.0
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 5.3e-87 324.7 214 70.6
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 5.3e-87 324.7 212 69.3
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 5.3e-87 324.7 206 74.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.2e-86 323.6 210 71.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.2e-86 323.6 213 71.8
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.6e-86 322.4 212 68.4
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.5e-86 321.6 210 71.4
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 7.7e-86 320.9 214 71.5
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.0e-85 320.5 207 69.6
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.3e-85 320.1 211 70.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.3e-85 320.1 212 68.4
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.7e-85 319.7 213 70.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.7e-85 319.7 212 69.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.7e-85 319.7 211 68.7
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.2e-85 319.3 210 69.5
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 2.9e-85 318.9 210 70.5
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.9e-85 318.9 212 68.4
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 3.8e-85 318.5 215 68.4
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 3.8e-85 318.5 207 70.0
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.0e-85 318.2 213 67.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 6.5e-85 317.8 212 67.5
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 6.5e-85 317.8 211 67.8
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.4e-84 316.6 212 67.5
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.2e-84 315.5 212 70.3
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.2e-84 315.1 211 68.2
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 5.5e-84 314.7 208 68.8
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 7.2e-84 314.3 206 68.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 3.6e-83 312.0 210 69.0
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 4.6e-83 311.6 208 71.2
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.0e-82 310.5 215 69.3
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.4e-82 310.1 210 67.1
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.4e-82 310.1 208 68.8
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.8e-82 309.7 213 66.7
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 3.0e-82 308.9 213 66.7
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.9e-82 308.5 205 70.2
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.5e-81 306.6 214 67.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.5e-81 305.8 214 68.2
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.2e-80 302.8 213 66.2
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.8e-80 302.4 213 66.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.8e-80 301.6 213 66.2
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.3e-80 301.2 210 64.8
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.1e-79 300.4 208 67.3
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.4e-79 300.1 213 65.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 67.8
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 67.8
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 67.8
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 3.1e-79 298.9 213 66.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.1e-79 298.9 210 68.1
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 3.1e-79 298.9 208 66.8
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 3.1e-79 298.9 208 68.8
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.1e-79 297.4 210 64.8
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.2e-78 297.0 208 67.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.2e-78 297.0 213 65.3
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.0e-78 296.2 205 66.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.0e-78 296.2 212 66.0
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.6e-78 295.8 234 62.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.8e-77 292.0 208 65.4
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.1e-76 290.4 211 63.5
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-76 289.7 222 63.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.4e-74 283.5 209 63.6
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.8e-74 283.1 189 66.7
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.1e-73 280.4 212 61.8
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 9.7e-73 277.3 212 62.3
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 4.8e-72 275.0 212 61.3
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.4e-71 273.5 199 66.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 9.1e-71 270.8 212 60.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.6e-70 269.2 184 68.5
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 5.9e-70 268.1 213 59.2
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.5e-68 263.5 202 62.4
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.5e-68 262.7 204 62.3
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-67 259.2 194 63.4
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 4.0e-66 255.4 173 69.4
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.1e-65 253.8 189 63.5
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.7e-65 251.5 194 62.9
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.3e-64 250.4 204 55.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.3e-63 245.0 206 51.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.5e-62 242.3 204 55.4
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.9e-61 239.2 159 70.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.2e-60 234.6 210 55.7
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.6e-59 233.4 212 50.5
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 3.6e-59 232.3 210 54.8
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.0e-57 226.5 189 59.8
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 7.5e-57 224.6 140 70.7
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.8e-56 221.9 210 53.3
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.5e-54 215.3 186 53.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.0e-53 214.2 136 66.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.5e-52 208.4 139 65.5
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.2e-50 201.8 229 48.9
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.0e-49 199.9 127 69.3
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-48 196.8 125 71.2
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 6.3e-48 194.9 210 44.3
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.0e-46 189.9 171 52.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.5e-46 188.7 178 51.1
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.3e-44 182.2 199 47.7
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-43 178.3 205 46.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-35 153.7 109 66.1
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.6e-33 146.4 110 61.8
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.8e-27 126.3 204 33.8
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 8.1e-27 124.8 230 33.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-25 120.9 79 62.0
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 8.3e-24 114.8 209 38.3
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.1e-23 111.7 138 47.1
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.6e-22 110.5 75 74.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.5e-20 101.3 70 68.6
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.8e-19 99.8 60 71.7
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 4.7e-19 99.0 211 31.8
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 3.1e-18 96.3 114 43.9
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.1e-18 96.3 114 43.9
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-17 93.6 114 42.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 3.4e-17 92.8 207 27.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-15 87.4 110 46.4
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.9e-15 87.0 178 32.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 5.6e-12 75.5 201 26.9
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 7.3e-12 75.1 39 76.9
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 2.1e-11 73.6 47 70.2
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.2e-11 72.0 108 42.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.2e-10 68.9 39 71.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 9.9e-09 64.7 40 72.5
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.9e-08 62.4 190 25.3
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 6.4e-08 62.0 145 28.3
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 3.2e-07 59.7 84 44.0
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 9.3e-07 58.2 84 42.9


User provided reference genes

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