Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.3e-122 443.0 214 100.0
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.1e-120 435.6 214 97.7
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 4.4e-118 427.9 214 95.8
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 4.2e-116 421.4 214 93.9
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 3.1e-111 405.2 214 90.2
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.6e-110 402.1 214 89.7
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 3.5e-107 391.7 210 87.6
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.7e-104 381.7 214 85.0
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.4e-103 379.8 213 84.0
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.6e-102 375.6 213 82.6
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 7.6e-102 374.0 213 82.2
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.9e-101 372.1 210 83.3
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 9.3e-100 367.1 213 82.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.9e-98 361.7 211 80.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 4.5e-94 348.2 215 75.8
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.3e-93 346.7 213 75.6
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 5.5e-92 341.3 213 76.1
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.6e-91 339.7 210 73.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 3.3e-89 332.0 210 72.4
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.3e-89 331.6 212 70.8
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 5.7e-89 331.3 209 71.8
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.7e-89 331.3 214 70.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 5.7e-89 331.3 213 70.9
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 9.7e-89 330.5 210 71.9
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 9.7e-89 330.5 211 71.6
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.3e-88 330.1 210 71.9
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.6e-88 329.7 210 72.9
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.6e-88 329.7 211 72.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.6e-88 329.7 211 72.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.6e-88 329.7 211 71.1
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.2e-88 329.3 211 71.1
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.2e-88 329.3 214 69.2
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.8e-88 328.9 210 70.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.1e-87 327.0 211 71.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.1e-87 327.0 213 68.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.1e-87 327.0 211 69.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.4e-87 326.6 212 68.4
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.1e-87 325.5 206 72.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 4.1e-87 325.1 208 70.2
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.2e-86 323.6 213 66.7
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.2e-86 323.6 213 68.1
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.2e-86 323.6 212 66.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.6e-86 322.4 212 69.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 3.4e-86 322.0 214 67.8
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.4e-86 322.0 213 69.0
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 4.5e-86 321.6 211 69.2
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 5.9e-86 321.2 214 70.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.3e-85 320.1 212 66.0
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.7e-85 319.7 212 67.0
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.7e-85 319.7 210 67.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.9e-85 318.9 211 66.8
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.9e-85 318.9 212 66.0
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 6.5e-85 317.8 212 65.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.4e-84 316.6 212 64.6
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.5e-84 315.8 215 66.5
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.2e-84 315.5 212 68.9
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 4.2e-84 315.1 214 67.3
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 7.2e-84 314.3 213 66.7
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 9.4e-84 313.9 214 65.9
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 9.4e-84 313.9 213 66.7
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.2e-83 313.5 213 66.7
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.6e-83 313.2 212 64.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.0e-82 310.5 210 67.1
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.8e-82 309.7 208 68.8
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 2.3e-82 309.3 208 65.9
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.7e-82 307.8 210 66.2
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 6.7e-82 307.8 213 66.7
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.8e-82 307.4 210 65.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.5e-81 306.6 210 66.7
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.0e-81 306.2 212 67.5
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 5.7e-81 304.7 211 66.8
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.8e-80 302.4 235 61.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.8e-80 301.6 213 65.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 8.2e-80 300.8 214 65.4
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.1e-79 300.4 208 67.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 67.3
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.8e-79 299.7 213 64.8
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.4e-79 299.3 213 65.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.4e-79 299.3 213 65.3
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.4e-79 299.3 213 65.3
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 3.1e-79 298.9 213 64.8
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.1e-79 298.9 210 67.1
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.1e-79 298.9 205 65.9
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 4.1e-79 298.5 213 64.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 5.3e-79 298.1 213 63.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 5.3e-79 298.1 213 64.3
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.5e-78 295.0 210 63.8
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 4.5e-78 295.0 213 64.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.8e-77 292.0 216 63.0
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.9e-76 289.7 211 62.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.2e-76 287.7 209 63.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 9.4e-76 287.3 211 61.6
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 3.0e-74 282.3 212 60.8
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 5.1e-74 281.6 199 67.8
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.6e-73 279.3 212 61.8
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.3e-73 278.9 189 64.6
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 5.7e-73 278.1 212 60.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.6e-70 270.0 184 67.4
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.7e-70 267.7 212 58.5
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-69 266.5 195 63.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 6.5e-69 264.6 209 56.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.9e-68 263.1 202 59.9
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-67 259.2 195 62.6
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.8e-66 256.5 206 58.7
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.4e-65 251.9 189 61.4
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.3e-64 250.4 173 66.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.7e-64 250.0 204 54.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.2e-64 249.6 206 52.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.4e-63 246.1 206 54.9
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.5e-60 236.1 159 68.6
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.2e-59 233.8 212 50.0
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.1e-59 233.0 210 53.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.0e-58 230.7 210 52.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.5e-57 226.9 189 57.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 9.8e-57 224.2 140 69.3
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.4e-55 219.5 210 51.0
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.5e-54 215.3 137 69.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.2e-52 208.0 139 64.7
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 9.4e-52 207.6 186 52.7
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-51 204.9 229 48.5
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 5.2e-50 201.8 136 66.2
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.7e-49 198.4 171 54.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.3e-48 194.5 125 70.4
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.0e-46 189.9 207 43.5
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.7e-45 186.8 199 48.2
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.3e-44 182.2 180 47.8
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-43 178.3 205 45.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-36 157.5 109 67.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.6e-35 152.5 110 62.7
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.0e-26 122.5 204 33.8
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-25 120.9 79 62.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.5e-25 120.6 230 31.3
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.4e-25 119.0 210 38.6
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 9.2e-23 111.3 138 45.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.1e-22 110.2 75 69.3
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.0e-21 107.8 69 71.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.2e-19 100.9 209 32.5
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 6.8e-18 95.1 60 66.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-17 94.4 114 42.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-17 94.4 114 42.1
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.5e-17 94.0 178 33.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 7.6e-17 91.7 207 27.5
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 7.6e-17 91.7 114 40.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.2e-14 84.3 47 78.7
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.5e-12 76.6 55 60.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 7.3e-12 75.1 201 26.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.8e-11 73.2 39 71.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.8e-10 70.5 108 39.8
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.0e-09 67.0 39 66.7
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 3.4e-09 66.2 185 26.5
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 2.2e-08 63.5 40 70.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.1e-07 61.2 190 25.8
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 4.2e-07 59.3 84 42.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.2e-06 57.8 84 41.7


User provided reference genes

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