Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1507.7 792 100.0
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1455.7 790 96.6
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1361.3 794 91.2
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1357.8 794 90.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1285.0 794 85.5
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1282.7 795 86.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1281.2 804 84.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1268.1 792 84.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1233.0 788 82.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1230.3 797 82.2
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1228.0 785 82.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1211.4 808 80.3
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1177.5 802 77.4
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1170.6 802 76.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 803 75.2
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 794 75.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1151.7 803 76.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 781 77.6
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 795 75.8
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1142.9 793 75.3
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1142.9 795 75.1
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1142.5 813 73.9
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 799 75.8
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1138.3 793 74.7
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1137.1 800 74.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 813 73.4
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 801 74.8
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1128.2 799 75.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 791 76.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 787 75.9
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 802 74.9
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 787 75.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1120.9 793 74.0
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1120.5 796 74.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 815 72.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 800 73.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 810 73.7
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 801 74.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 800 74.1
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1112.1 845 70.4
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 806 73.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 797 73.8
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 800 72.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 865 70.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 799 72.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 801 73.4
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 757 75.3
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 798 71.3
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 794 71.9
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 794 71.7
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 793 72.4
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1076.2 795 71.7
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1076.2 782 72.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.4e-312 1074.7 784 72.4
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 844 68.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.8e-311 1071.2 789 72.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 9.1e-310 1066.6 804 70.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 827 69.4
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 805 71.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-308 1062.8 785 72.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 809 69.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 796 70.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 792 70.6
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 6.1e-306 1053.9 784 71.2
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.4e-305 1052.7 790 70.0
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 796 70.1
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 808 69.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.0e-305 1051.6 894 65.1
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 4.0e-305 1051.2 777 71.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 4.0e-305 1051.2 777 71.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 781 71.8
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 781 71.8
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 781 71.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.2e-301 1039.6 787 71.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.3e-300 1035.4 796 69.3
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.9e-299 1032.3 790 69.4
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.5e-299 1031.9 796 68.7
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 9.5e-299 1030.0 783 69.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.0e-297 1025.0 806 68.5
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 4.0e-297 1024.6 756 72.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.5e-296 1022.7 802 67.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-295 1019.6 803 67.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.7e-295 1019.2 795 68.1
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.2e-293 1013.1 785 68.0
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.1e-291 1006.5 783 69.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.9e-291 1005.7 793 69.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.3e-291 1005.0 796 67.2
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.8e-289 999.2 795 66.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 4.0e-289 998.0 646 79.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 2.6e-288 995.3 786 67.4
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.7e-287 992.6 784 67.2
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.0e-284 981.1 646 78.5
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.1e-283 979.9 646 78.8
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.2e-282 976.5 797 66.2
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.9e-279 965.3 784 68.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 7.1e-278 960.7 781 66.3
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.7e-277 958.7 777 67.6
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.1e-273 946.8 782 67.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.9e-271 938.7 805 63.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 4.1e-270 934.9 784 63.6
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.5e-269 931.8 777 65.5
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.1e-267 926.8 789 64.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.6e-264 915.6 801 60.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.6e-261 906.4 830 60.0
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 5.1e-260 901.4 783 65.1
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.9e-259 899.4 781 63.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.2e-248 863.6 722 67.7
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.4e-248 862.1 811 57.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-247 860.1 793 60.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.9e-247 858.2 821 58.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.6e-245 851.7 793 57.1
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-222 776.2 641 67.1
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.9e-220 768.8 646 65.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.2e-207 726.5 797 51.2
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.6e-200 703.7 480 77.3
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.7e-186 656.0 851 46.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.7e-186 656.0 851 46.4
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 7.0e-177 625.2 874 44.3
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.3e-174 615.9 839 44.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.8e-165 586.6 531 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.7e-165 585.9 829 42.7
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.8e-164 582.0 620 54.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.9e-161 573.9 594 54.7
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.0e-160 568.9 654 49.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.9e-159 566.2 459 64.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 9.2e-153 545.0 434 66.1
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 3.3e-142 510.0 398 68.6
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-110 402.1 601 45.8
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-97 359.0 620 42.7
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.8e-79 301.6 211 74.9
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-78 298.5 207 75.8
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.4e-76 290.0 768 31.1
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-75 288.5 197 76.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-75 287.7 197 76.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-75 287.7 197 76.1
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.4e-68 264.6 291 56.4
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-65 254.6 474 40.7
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 4.4e-62 243.8 211 62.6
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.7e-61 241.9 239 58.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.3e-55 221.5 563 34.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.9e-50 204.1 131 79.4
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.0e-46 191.8 121 75.2
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.1e-44 183.3 800 27.5
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-43 181.8 243 47.3
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.8e-37 161.0 92 80.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.4e-37 159.8 87 81.6
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.4e-37 159.8 87 81.6
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-36 158.3 360 32.5
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.0e-31 139.8 130 57.7
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.7e-26 125.6 142 50.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-24 117.9 75 85.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-22 111.7 89 59.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.8e-21 107.8 107 51.4
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 6.4e-21 107.1 71 69.0
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.4e-21 106.7 135 48.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-18 99.0 81 59.3
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 5.6e-17 94.0 74 64.9
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-16 92.0 146 37.0
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.4e-15 88.6 55 83.6
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.2e-14 86.3 59 67.8
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.2e-13 82.0 136 38.2
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-12 78.2 109 45.0
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.7e-11 75.1 77 53.2
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-08 65.5 118 46.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-07 63.2 85 41.2
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.4e-07 62.0 77 48.1
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 5.3e-07 60.8 53 67.9
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.6e-06 58.5 52 65.4
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.4e-06 58.2 76 48.7
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.0e-05 56.6 51 62.7


User provided reference genes

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