Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.8e-25 118.6 66 100.0
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.8e-22 108.6 66 90.9
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 5.9e-21 103.6 63 87.3
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 6.6e-20 100.1 66 81.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 5.5e-19 97.1 63 82.5
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.2e-18 95.9 63 84.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 78.8
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.6e-18 95.5 66 77.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-18 94.7 67 82.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-18 94.7 67 82.1
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.1e-18 93.6 63 79.4
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.1e-18 93.6 61 82.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 6.1e-18 93.6 66 81.8
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.0e-17 92.8 66 75.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.4e-17 92.4 65 78.5
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.8e-17 92.0 63 79.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.0e-17 90.9 66 75.8
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 5.2e-17 90.5 67 76.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 5.2e-17 90.5 66 72.7
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.8e-17 90.1 70 71.4
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.8e-17 90.1 64 76.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.2e-16 89.4 69 72.5
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 78.8
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-16 89.0 59 81.4
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-16 88.6 70 71.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-16 88.6 66 75.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 2.6e-16 88.2 63 74.6
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 3.4e-16 87.8 65 80.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.4e-16 87.4 56 83.9
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 4.4e-16 87.4 66 72.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.7e-16 87.0 70 72.9
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 73.8
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 73.8
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.7e-15 85.5 68 73.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.7e-15 84.3 65 73.8
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.9e-15 84.0 67 68.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.9e-15 84.0 67 68.7
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.3e-15 83.6 60 75.0
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.3e-15 83.6 66 69.7
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 71 67.6
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.4e-14 81.6 71 67.6
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.0e-14 80.1 71 64.8
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 9.2e-14 79.7 62 71.0
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 9.2e-14 79.7 62 71.0
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-13 79.3 68 72.1
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.7e-13 78.2 61 70.5
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 3.5e-13 77.8 66 69.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 4.5e-13 77.4 63 68.3
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.5e-13 77.4 67 64.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 3.9e-12 74.3 69 65.2
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 5.0e-12 73.9 74 67.6
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 5.0e-12 73.9 67 62.7
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 6.6e-12 73.6 74 63.5
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 8.6e-12 73.2 58 75.9
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-11 72.8 69 65.2
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 1.5e-11 72.4 67 61.2
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.9e-11 72.0 70 61.4
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.5e-11 71.6 66 66.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 4.3e-11 70.9 66 60.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.1e-10 68.6 60 63.3
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 2.8e-10 68.2 63 61.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.7e-10 67.4 63 61.9
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 6.1e-10 67.0 66 57.6
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 6.1e-10 67.0 63 63.5
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.0e-09 66.2 62 61.3
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.4e-09 65.9 61 60.7
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.8e-09 65.5 56 67.9
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 2.3e-09 65.1 60 60.0
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 2.3e-09 65.1 61 59.0
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.1e-09 64.7 61 60.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.1e-09 64.7 61 60.7
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 4.0e-09 64.3 69 56.5
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 4.0e-09 64.3 60 60.0
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.0e-09 64.3 63 60.3
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.0e-09 64.3 60 60.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.0e-09 64.3 54 66.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.0e-09 64.3 54 70.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 4.0e-09 64.3 56 66.1
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 5.2e-09 63.9 60 58.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.2e-09 63.9 60 60.0
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.2e-09 63.9 60 60.0
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.2e-09 63.9 60 60.0
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.2e-09 63.9 60 61.7
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 6.8e-09 63.5 66 57.6
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 6.8e-09 63.5 84 51.2
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 6.8e-09 63.5 56 67.9
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.8e-09 63.5 60 60.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.8e-09 63.5 61 59.0
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.9e-09 63.2 62 56.5
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.9e-09 63.2 62 56.5
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 8.9e-09 63.2 54 64.8
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.9e-09 63.2 60 60.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.9e-09 63.2 60 58.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.2e-08 62.8 64 57.8
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.5e-08 62.4 62 58.1
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.5e-08 62.4 88 47.7
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.5e-08 62.4 62 54.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-08 62.4 61 60.7
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.5e-08 62.4 65 56.9
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.0e-08 62.0 54 63.0
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-08 62.0 61 57.4
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.0e-08 62.0 58 60.3
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.0e-08 62.0 66 56.1
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 58 60.3
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-08 62.0 62 58.1
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.6e-08 61.6 59 59.3
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.6e-08 61.6 51 70.6
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.4e-08 61.2 84 48.8
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 3.4e-08 61.2 81 48.1
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.4e-08 61.2 58 60.3
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.4e-08 61.2 57 63.2
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 3.4e-08 61.2 58 58.6
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.4e-08 61.2 54 64.8
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.4e-08 61.2 58 62.1
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 4.4e-08 60.8 82 47.6
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 4.4e-08 60.8 82 47.6
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.4e-08 60.8 58 58.6
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 4.4e-08 60.8 56 64.3
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 5.8e-08 60.5 83 47.0
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 5.8e-08 60.5 54 64.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.8e-08 60.5 60 55.0
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 5.8e-08 60.5 58 60.3
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.8e-08 60.5 66 54.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.8e-08 60.5 66 54.5
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 5.8e-08 60.5 84 47.6
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.8e-08 60.5 54 64.8
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 7.5e-08 60.1 58 60.3
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.5e-08 60.1 74 55.4
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 7.5e-08 60.1 60 58.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 7.5e-08 60.1 60 58.3
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 9.8e-08 59.7 65 55.4
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 9.8e-08 59.7 57 59.6
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 9.8e-08 59.7 63 55.6
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 9.8e-08 59.7 54 61.1
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.8e-08 59.7 60 58.3
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.3e-07 59.3 61 55.7
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.3e-07 59.3 54 63.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.3e-07 59.3 59 59.3
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.7e-07 58.9 41 70.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.7e-07 58.9 56 62.5
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.7e-07 58.9 56 62.5
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-07 58.5 84 45.2
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.2e-07 58.5 58 58.6
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 2.9e-07 58.2 55 61.8
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.9e-07 58.2 55 60.0
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 58 58.6
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.7e-07 57.8 60 56.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 4.9e-07 57.4 60 55.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 4.9e-07 57.4 60 55.0
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.4e-07 57.0 49 67.3
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 63.6
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 1.9e-06 55.5 84 44.0
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.2e-06 54.7 65 53.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 53 58.5
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 4.1e-06 54.3 66 53.0
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 4.1e-06 54.3 66 53.0
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 5.4e-06 53.9 58 55.2
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 5.4e-06 53.9 86 41.9
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 5.4e-06 53.9 86 41.9
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.4e-06 53.9 56 55.4
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 7.0e-06 53.5 58 55.2
SEGI_02829 Sequoiadendron giganteum HOM05D001568 ORTHO05D004404 7.0e-06 53.5 49 55.1
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 9.2e-06 53.1 53 50.9


User provided reference genes

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