Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 1.4e-18 95.1 45 100.0
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 7.1e-18 92.8 45 97.8
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 1.6e-17 91.7 45 95.6
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 4.3e-15 83.6 45 84.4
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 9.6e-15 82.4 45 82.2
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 2.1e-14 81.3 44 90.9
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.8e-14 80.9 45 82.2
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.8e-14 80.9 45 82.2
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.8e-14 80.9 45 82.2
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 3.7e-14 80.5 45 77.8
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 4.8e-14 80.1 45 80.0
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 6.2e-14 79.7 45 82.2
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.1e-13 77.4 41 85.4
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.1e-13 77.4 41 85.4
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 3.1e-13 77.4 41 85.4
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 3.1e-13 77.4 47 76.6
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 5.3e-13 76.6 44 79.5
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 4.5e-12 73.6 45 73.3
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 7.6e-12 72.8 41 80.5
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 7.6e-12 72.8 41 80.5
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 7.6e-12 72.8 44 75.0
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 1.0e-11 72.4 37 86.5
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.0e-11 72.4 42 83.3
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 2.9e-11 70.9 40 80.0
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 8.4e-11 69.3 36 77.8
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 1.4e-10 68.6 36 83.3
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 1.4e-10 68.6 36 83.3
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 1.4e-10 68.6 36 83.3
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 1.4e-10 68.6 36 83.3
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 1.4e-10 68.6 36 83.3
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 1.4e-10 68.6 37 83.8
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.4e-10 68.6 45 71.1
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.4e-10 68.6 45 71.1
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 1.9e-10 68.2 45 71.1
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 1.9e-10 68.2 45 71.1
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 2.5e-10 67.8 41 75.6
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 4.2e-10 67.0 45 68.9
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 5.5e-10 66.6 36 80.6
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 5.5e-10 66.6 41 73.2
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 5.5e-10 66.6 41 73.2
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 5.5e-10 66.6 36 80.6
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 5.5e-10 66.6 45 68.9
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 5.5e-10 66.6 44 70.5
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 7.1e-10 66.2 44 70.5
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 9.3e-10 65.9 44 68.2
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 9.3e-10 65.9 45 66.7
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 9.3e-10 65.9 45 71.1
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 9.3e-10 65.9 45 71.1
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 9.3e-10 65.9 45 68.9
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 1.2e-09 65.5 41 73.2
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.2e-09 65.5 45 66.7
CiPaw.15G127400 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.6e-09 65.1 45 60.0
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.6e-09 65.1 45 66.7
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 2.1e-09 64.7 44 70.5
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 2.1e-09 64.7 44 70.5
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 2.1e-09 64.7 44 70.5
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 2.1e-09 64.7 45 66.7
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 2.1e-09 64.7 44 68.2
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 2.1e-09 64.7 41 73.2
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 2.1e-09 64.7 46 67.4
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 2.1e-09 64.7 46 67.4
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 2.1e-09 64.7 45 66.7
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 2.7e-09 64.3 44 68.2
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 2.7e-09 64.3 41 70.7
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 3.5e-09 63.9 44 72.7
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 3.5e-09 63.9 44 72.7
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 3.5e-09 63.9 44 72.7
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 3.5e-09 63.9 45 64.4
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 4.6e-09 63.5 40 72.5
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 4.6e-09 63.5 40 72.5
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 4.6e-09 63.5 45 62.2
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 4.6e-09 63.5 45 71.1
C08p16040 Brassica napus HOM05D004326 ORTHO05D004570 6.1e-09 63.2 44 70.5
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 6.1e-09 63.2 44 65.9
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 7.9e-09 62.8 37 73.0
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 7.9e-09 62.8 36 72.2
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 7.9e-09 62.8 44 63.6
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 7.9e-09 62.8 41 68.3
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 7.9e-09 62.8 45 62.2
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 7.9e-09 62.8 46 65.2
Prupe.5G217900 Prunus persica HOM05D004326 ORTHO05D004570 7.9e-09 62.8 44 61.4
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 1.3e-08 62.0 40 72.5
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 1.3e-08 62.0 40 72.5
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 1.3e-08 62.0 40 72.5
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 1.3e-08 62.0 45 62.2
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 1.3e-08 62.0 47 66.0
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 1.3e-08 62.0 47 66.0
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.3e-08 62.0 36 77.8
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 1.8e-08 61.6 45 64.4
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 1.8e-08 61.6 44 59.1
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.8e-08 61.6 43 69.8
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.8e-08 61.6 46 67.4
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 2.3e-08 61.2 41 70.7
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 2.3e-08 61.2 40 72.5
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.3e-08 61.2 41 65.9
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 3.0e-08 60.8 41 65.9
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.0e-08 60.8 41 65.9
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 3.0e-08 60.8 41 65.9
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 3.0e-08 60.8 45 64.4
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 3.0e-08 60.8 44 65.9
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 3.0e-08 60.8 45 60.0
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 3.9e-08 60.5 45 66.7
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.9e-08 60.5 38 68.4
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 5.1e-08 60.1 38 68.4
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 5.1e-08 60.1 45 66.7
Gohir.A11G006950 Gossypium hirsutum HOM05D004326 ORTHO05D004570 5.1e-08 60.1 45 57.8
Gohir.D11G006050 Gossypium hirsutum HOM05D004326 ORTHO05D004570 5.1e-08 60.1 45 57.8
Gorai.007G007300 Gossypium raimondii HOM05D004326 ORTHO05D004570 5.1e-08 60.1 45 57.8
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 5.1e-08 60.1 37 75.7
ClCG05G012040 Citrullus lanatus HOM05D004326 ORTHO05D004570 6.7e-08 59.7 38 73.7
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 6.7e-08 59.7 42 69.0
Manes.05G139100 Manihot esculenta HOM05D004326 ORTHO05D004570 8.7e-08 59.3 46 58.7
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 8.7e-08 59.3 39 71.8
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 8.7e-08 59.3 44 65.9
TWI60G1416 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 8.7e-08 59.3 42 69.0
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-07 58.9 45 66.7
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 1.1e-07 58.9 42 66.7
TWI81G0420 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.1e-07 58.9 42 69.0
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.5e-07 58.5 45 64.4
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 1.5e-07 58.5 36 72.2
AL3G11830 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.9e-07 58.2 41 70.7
THA.LOC109117025 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.9e-07 58.2 41 61.0
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 2.5e-07 57.8 45 64.4
A02p03350 Brassica napus HOM05D004326 ORTHO05D004570 3.3e-07 57.4 45 64.4
BraA02t05306Z Brassica rapa HOM05D004326 ORTHO05D004570 3.3e-07 57.4 45 64.4
A03p32970 Brassica napus HOM05D004326 ORTHO05D004570 4.3e-07 57.0 41 65.9
C03p40100 Brassica napus HOM05D004326 ORTHO05D004570 4.3e-07 57.0 41 65.9
BolC3t16276H Brassica oleracea HOM05D004326 ORTHO05D004570 4.3e-07 57.0 41 65.9
BraA03t12465Z Brassica rapa HOM05D004326 ORTHO05D004570 4.3e-07 57.0 41 65.9
CARHR076480 Cardamine hirsuta HOM05D004326 ORTHO05D004570 4.3e-07 57.0 41 65.9
Duzib068G0156 Durio zibethinus HOM05D004326 ORTHO05D004570 4.3e-07 57.0 45 53.3
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 4.3e-07 57.0 46 60.9
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 5.7e-07 56.6 48 58.3
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 7.4e-07 56.2 46 56.5
Medtr7g018430 Medicago truncatula HOM05D004326 ORTHO05D004570 9.7e-07 55.8 33 81.8
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 1.3e-06 55.5 48 58.3
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 1.3e-06 55.5 36 66.7
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-06 55.5 47 53.2
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-06 55.5 47 53.2
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.3e-06 55.5 47 53.2
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 1.6e-06 55.1 44 61.4
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 2.8e-06 54.3 30 83.3
Carub.0003s0160 Capsella rubella HOM05D004326 ORTHO05D004570 3.7e-06 53.9 39 69.2
Duzib084G0016 Durio zibethinus HOM05D004326 ORTHO05D004570 4.8e-06 53.5 48 56.2
Glyma.12G187300 Glycine max HOM05D004326 ORTHO05D004570 6.3e-06 53.1 40 65.0
PGSC0003DMG400007475 Solanum tuberosum HOM05D004326 ORTHO05D004570 6.3e-06 53.1 35 68.6
AT3G25717 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 8.2e-06 52.8 37 67.6
A09p24960 Brassica napus HOM05D004326 ORTHO05D004570 8.2e-06 52.8 37 67.6
BraA09t38084Z Brassica rapa HOM05D004326 ORTHO05D004570 8.2e-06 52.8 37 67.6
Carub.0005s0354 Capsella rubella HOM05D004326 ORTHO05D004570 8.2e-06 52.8 37 67.6
ClCG03G009910 Citrullus lanatus HOM05D004326 ORTHO05D004570 8.2e-06 52.8 30 73.3
Medtr1g093650 Medicago truncatula HOM05D004326 ORTHO05D004570 8.2e-06 52.8 47 59.6


User provided reference genes

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