Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.0e-190 667.9 338 100.0
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.3e-190 667.5 338 99.7
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.7e-188 662.5 340 99.1
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.9e-188 661.8 338 98.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 9.3e-187 656.8 338 97.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 3.0e-185 651.7 337 97.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 2.5e-184 648.7 338 96.2
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 2.5e-184 648.7 338 96.2
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 2.5e-184 648.7 338 96.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 4.3e-184 647.9 338 95.9
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.4e-182 642.1 336 95.5
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.1e-182 641.7 338 95.9
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 4.9e-180 634.4 338 94.1
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-176 622.5 330 93.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.3e-176 621.7 339 92.0
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.3e-176 621.3 332 92.8
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 4.3e-176 621.3 338 91.7
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 91.7
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 91.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.6e-175 619.4 336 91.4
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.1e-175 619.0 338 92.0
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 338 90.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 8.2e-175 617.1 338 90.5
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 8.2e-175 617.1 336 91.1
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.8e-174 615.9 331 92.7
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.4e-174 615.5 336 90.8
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 4.1e-174 614.8 335 90.7
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.1e-174 614.8 339 90.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 89.7
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 90.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.0e-174 613.6 339 90.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 89.9
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 90.2
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 89.9
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 4.5e-173 611.3 337 90.5
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 4.5e-173 611.3 337 90.8
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 90.9
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 90.9
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.9e-173 610.9 338 89.6
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 5.9e-173 610.9 333 91.6
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 7.6e-173 610.5 342 89.2
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 90.6
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.3
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 3.8e-172 608.2 335 90.4
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 88.8
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 90.2
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 89.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 89.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.1e-171 606.7 338 89.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 333 89.8
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-171 606.3 332 90.1
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.9e-171 605.9 338 88.5
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.9e-171 605.9 338 88.5
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.1
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.5e-171 605.5 338 89.3
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.2e-171 605.1 338 89.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 332 89.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.6e-170 602.8 332 89.8
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.6e-170 602.8 338 87.9
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.9e-169 598.2 339 88.2
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 339 88.2
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 6.7e-169 597.4 332 88.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 8.7e-169 597.0 332 88.6
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-168 596.7 339 87.9
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.5e-168 595.5 338 87.3
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.5e-168 595.5 332 88.3
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.3e-168 594.7 338 87.9
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 7.4e-168 594.0 338 87.0
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 9.7e-168 593.6 325 91.7
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.3e-167 593.2 378 80.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 340 87.1
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 3.7e-167 591.7 332 88.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.8e-167 591.3 339 87.0
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 8.2e-167 590.5 334 88.0
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.0e-165 585.9 352 84.4
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.0e-164 583.6 336 84.2
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-164 583.6 335 85.1
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-163 579.7 317 90.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.5e-163 578.9 339 86.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.6e-162 576.2 309 91.6
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.6e-162 576.2 335 83.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.6e-162 574.7 317 90.2
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 3.0e-161 572.0 336 83.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.9e-161 571.6 319 89.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.9e-161 571.6 333 83.8
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 83.3
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 83.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 82.7
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 6.7e-161 570.9 334 83.5
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 83.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 83.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.1e-160 570.1 309 90.6
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.5e-160 569.7 336 83.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.0e-160 569.3 333 83.5
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.0e-160 569.3 333 83.5
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.6e-160 568.9 333 83.2
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 336 83.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 336 82.7
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 338 85.5
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 4.3e-160 568.2 338 82.2
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.3e-160 568.2 320 88.8
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 9.7e-160 567.0 336 82.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.7e-159 566.2 336 82.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.8e-159 565.5 339 85.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 8.2e-159 563.9 327 83.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.1e-158 563.5 336 82.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.4e-158 563.1 334 82.6
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 3.1e-158 562.0 337 81.6
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 5.3e-158 561.2 351 79.5
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 6.9e-158 560.8 336 82.1
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.0e-157 559.3 319 86.5
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 5.5e-155 551.2 336 83.6
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 3.0e-153 545.4 334 78.1
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 3.3e-152 542.0 332 77.1
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 7.4e-152 540.8 378 75.9
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.8e-151 538.1 314 83.8
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.4e-150 535.8 337 77.7
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.2e-149 533.5 334 77.2
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.9e-149 531.2 295 90.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.7e-149 530.8 334 76.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.2e-148 529.3 417 68.6
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.6e-141 506.5 363 72.2
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.2e-139 498.4 271 90.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.7e-138 495.0 338 77.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 8.8e-137 490.7 262 93.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.4e-136 488.4 262 93.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.4e-136 488.4 262 93.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.8e-135 485.7 320 73.4
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.7e-133 479.2 336 75.6
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.7e-130 468.4 336 73.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.1e-123 447.2 341 67.4
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 4.4e-120 435.3 251 84.5
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.1e-118 430.6 238 88.7
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 2.1e-114 416.4 315 62.2
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.0e-112 409.8 251 81.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.7e-108 396.7 216 90.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 4.3e-107 392.1 241 78.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.4e-102 376.3 330 58.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.7e-100 370.2 317 55.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 5.5e-54 215.7 134 79.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.9e-45 185.3 168 59.5
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.8e-34 150.2 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.9e-30 137.5 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.2e-27 128.3 80 76.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 73 80.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 2.4e-25 120.6 74 77.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.0e-20 103.6 109 56.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.1e-14 85.1 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.8e-13 80.5 61 72.1
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.1e-13 79.3 42 85.7
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.2e-12 76.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.8e-10 70.5 118 37.3
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.7e-07 61.2 60 58.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.7e-07 61.2 60 58.3
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.5e-06 58.2 125 36.0
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 2.5e-06 57.4 86 44.2


User provided reference genes

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