Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G016500 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 2.4e-153 545.8 348 100.0
VMungo1383G0720 Vigna mungo HOM05D002685 ORTHO05D001487 1.5e-86 323.9 352 61.6
Glyma.18G284900 Glycine max HOM05D002685 ORTHO05D001487 2.0e-83 313.5 350 62.3
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 2.5e-78 296.6 347 55.9
VMungo1383G1702 Vigna mungo HOM05D002685 ORTHO05D001487 4.3e-78 295.8 342 55.8
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 8.7e-71 271.6 407 50.6
Glyma.02G096400 Glycine max HOM05D002685 ORTHO05D001487 3.6e-69 266.2 363 56.5
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 6.0e-48 195.7 422 50.2
Lalb_Chr10g0092001 Lupinus albus HOM05D002685 ORTHO05D001487 2.4e-44 183.7 322 43.2
Psat3g186840 Pisum sativum HOM05D002685 ORTHO05D001487 4.8e-37 159.5 347 38.6
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 8.2e-37 158.7 309 38.8
SalBow2G0376 Salvia bowleyana HOM05D002685 ORTHO05D001487 3.1e-36 156.8 338 37.6
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 4.1e-36 156.4 314 37.3
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 9.0e-36 155.2 380 43.4
SalBow2G0840 Salvia bowleyana HOM05D002685 ORTHO05D001487 9.0e-36 155.2 338 37.6
Sabra03G0122800 Salix brachista HOM05D002685 ORTHO05D001487 5.9e-35 152.5 375 34.4
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 7.7e-35 152.1 362 45.3
TPR.G2897 Trifolium pratense HOM05D002685 ORTHO05D001487 6.5e-34 149.1 353 39.7
CsaV3_4G002950 Cucumis sativus L. HOM05D002685 ORTHO05D001487 1.1e-33 148.3 336 37.2
Medtr7g022490 Medicago truncatula HOM05D002685 ORTHO05D001487 1.1e-33 148.3 397 39.8
Medtr7g022790 Medicago truncatula HOM05D002685 ORTHO05D001487 1.1e-33 148.3 397 40.1
Psat3g186880 Pisum sativum HOM05D002685 ORTHO05D001487 1.1e-33 148.3 336 43.8
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.9e-33 147.5 364 44.5
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 1.9e-33 147.5 364 44.5
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 1.9e-33 147.5 341 34.6
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 2.1e-32 144.1 380 33.4
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 3.6e-32 143.3 370 34.6
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 1.4e-31 141.4 310 34.5
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 2.3e-31 140.6 373 33.2
PGR119G2530 Punica granatum HOM05D002685 ORTHO05D001487 2.6e-30 137.1 388 31.7
vmacro01042 Vaccinium macrocarpon HOM05D002685 ORTHO05D001487 5.7e-30 136.0 388 34.0
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 1.3e-29 134.8 381 32.8
Psat3g186800 Pisum sativum HOM05D002685 ORTHO05D001487 2.2e-29 134.0 170 49.4
Cfa009398 Carpinus fangiana HOM05D002685 ORTHO05D001487 8.2e-29 132.1 369 33.6
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 6.9e-28 129.0 369 34.1
TWI75G0855 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 6.9e-28 129.0 323 35.6
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 3.4e-27 126.7 131 53.4
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 4.5e-27 126.3 376 30.9
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 5.0e-26 122.9 331 32.0
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 1.4e-25 121.3 179 46.9
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 1.9e-25 120.9 332 34.0
PSO478G3563 Papaver somniferum HOM05D002685 ORTHO05D001487 2.5e-25 120.6 319 37.3
TPR.G27398 Trifolium pratense HOM05D002685 ORTHO05D001487 2.5e-25 120.6 124 54.8
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 1.6e-24 117.9 361 33.0
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 2.1e-24 117.5 381 31.5
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 4.7e-24 116.3 311 39.9
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 1.4e-23 114.8 361 32.7
SGA_v2.0_scaffold96G29063 Striga asiatica HOM05D002685 ORTHO05D001487 1.4e-23 114.8 319 33.5
CiPaw.05G105900 Carya illinoinensis HOM05D002685 ORTHO05D001487 1.8e-23 114.4 184 43.5
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 2.3e-23 114.0 387 38.2
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 2.0e-22 110.9 158 44.9
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 2.0e-22 110.9 309 31.4
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 2.6e-22 110.5 344 31.4
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 3.3e-22 110.2 150 45.3
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 5.7e-22 109.4 327 31.5
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 9.7e-22 108.6 147 48.3
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 1.7e-21 107.8 338 32.8
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 2.2e-21 107.5 353 30.9
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 2.2e-21 107.5 381 30.7
Psat3g186080 Pisum sativum HOM05D002685 ORTHO05D001487 2.2e-21 107.5 321 34.0
TAR365G1211 Trochodendron aralioides HOM05D002685 ORTHO05D001487 2.2e-21 107.5 372 29.6
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.8e-21 107.1 113 54.9
MBI07_g36513_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 2.8e-21 107.1 134 50.7
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.8e-21 107.1 335 32.8
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 3.7e-21 106.7 318 31.4
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 3.7e-21 106.7 402 38.3
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 6.3e-21 105.9 334 32.9
FAN17G2673 Fragaria x ananassa HOM05D002685 ORTHO05D001487 8.2e-21 105.5 332 31.6
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 8.2e-21 105.5 321 31.2
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 8.2e-21 105.5 148 45.9
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.4e-20 104.8 324 30.9
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 2.4e-20 104.0 319 31.0
Nitab4.5_0000337g0100 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.4e-20 104.0 335 32.2
Migut.K01013 Erythranthe guttata HOM05D002685 ORTHO05D001487 7.0e-20 102.4 330 33.3
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 9.1e-20 102.1 324 31.2
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 9.1e-20 102.1 141 45.4
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 2.0e-19 100.9 371 29.1
AUR62005663 Chenopodium quinoa HOM05D002685 ORTHO05D001487 3.5e-19 100.1 343 32.1
Cc09_g08480 Coffea canephora HOM05D002685 ORTHO05D001487 4.5e-19 99.8 325 31.4
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 7.7e-19 99.0 350 29.7
ATR0582G338 Amborella trichopoda HOM05D002685 ORTHO05D001487 1.0e-18 98.6 165 42.4
SGA_v2.0_scaffold68G22835 Striga asiatica HOM05D002685 ORTHO05D001487 1.0e-18 98.6 183 41.5
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.7e-18 97.8 316 39.9
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 1.7e-18 97.8 329 31.6
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 2.9e-18 97.1 367 31.6
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 3.8e-18 96.7 105 52.4
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 3.8e-18 96.7 135 44.4
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 8.5e-18 95.5 150 43.3
MSTRG.15538 Avicennia marina HOM05D002685 ORTHO05D001487 1.5e-17 94.7 117 51.3
Nitab4.5_0003401g0080 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.9e-17 94.4 190 40.5
PSO017G3972 Papaver somniferum HOM05D002685 ORTHO05D001487 1.9e-17 94.4 140 44.3
SHI04197 Sapria himalayana HOM05D002685 ORTHO05D001487 1.9e-17 94.4 132 46.2
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 1.9e-17 94.4 146 43.8
HanXRQChr12g0362251 Helianthus annuus HOM05D002685 ORTHO05D001487 2.5e-17 94.0 160 41.9
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 2.5e-17 94.0 322 40.4
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 3.2e-17 93.6 136 42.6
Gohir.D10G237708 Gossypium hirsutum HOM05D002685 ORTHO05D001487 4.2e-17 93.2 179 41.3
TPR.G15496 Trifolium pratense HOM05D002685 ORTHO05D001487 4.2e-17 93.2 360 33.3
Gorai.001G075700 Gossypium raimondii HOM05D002685 ORTHO05D001487 5.5e-17 92.8 179 41.9
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 1.2e-16 91.7 197 36.5
AUR62028890 Chenopodium quinoa HOM05D002685 ORTHO05D001487 1.6e-16 91.3 338 33.4
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 2.7e-16 90.5 322 30.7
CDE05G2679 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 3.6e-16 90.1 133 42.9
THA.LOC104801613 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 3.6e-16 90.1 258 34.5
CDE05G0851 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 4.7e-16 89.7 157 38.9
TAR622G0718 Trochodendron aralioides HOM05D002685 ORTHO05D001487 1.0e-15 88.6 347 27.4
unitig_62.g23633 Utricularia gibba HOM05D002685 ORTHO05D001487 1.0e-15 88.6 113 53.1
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 1.4e-15 88.2 323 29.4
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 1.4e-15 88.2 323 29.4
unitig_52.g17421 Utricularia gibba HOM05D002685 ORTHO05D001487 3.0e-15 87.0 406 28.8
Nn3g18831 Nelumbo nucifera HOM05D002685 ORTHO05D001487 4.0e-15 86.7 118 49.2
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 8.8e-15 85.5 380 32.4
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 5.7e-14 82.8 116 45.7
Oeu058906.1 Olea europaea HOM05D002685 ORTHO05D001487 5.7e-14 82.8 190 36.3
Sopen10g033620 Solanum pennellii HOM05D002685 ORTHO05D001487 5.7e-14 82.8 123 43.1
Lj2P1097T8 Lonicera japonica HOM05D002685 ORTHO05D001487 2.8e-13 80.5 103 44.7
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 9.1e-12 75.5 98 45.9
HPP92_006390 Vanilla planifolia HOM05D002685 ORTHO05D001487 1.2e-11 75.1 193 33.2
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.6e-11 74.7 182 38.5
TPR.G38293 Trifolium pratense HOM05D002685 ORTHO05D001487 4.5e-11 73.2 283 37.8
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 5.9e-11 72.8 143 39.2
SEGI_09232 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.0e-10 72.0 197 32.0
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.2e-10 70.9 180 37.2
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.2e-10 70.9 182 36.3
Atru.chr3.3710 Acer truncatum HOM05D002685 ORTHO05D001487 5.5e-09 66.2 52 63.5
TAR629G2320 Trochodendron aralioides HOM05D002685 ORTHO05D001487 1.6e-08 64.7 85 51.8
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 6.1e-08 62.8 130 36.9
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 8.0e-08 62.4 111 38.7
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 8.0e-08 62.4 135 37.8
SEGI_19830 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 8.0e-08 62.4 169 36.1
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.0e-07 62.0 175 34.3
QL03p029584 Quercus lobata HOM05D002685 ORTHO05D001487 1.4e-07 61.6 113 38.9
QL05p082393 Quercus lobata HOM05D002685 ORTHO05D001487 1.4e-07 61.6 111 39.6
Zm00001eb252920 Zea mays HOM05D002685 ORTHO05D001487 1.4e-07 61.6 99 38.4
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 1.8e-07 61.2 109 43.1
Zm00001eb170080 Zea mays HOM05D018687 ORTHO05D001487 2.3e-07 60.8 352 24.1
GSVIVG01000923001 Vitis vinifera HOM05D002685 ORTHO05D001487 3.0e-07 60.5 55 56.4
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 4.0e-07 60.1 175 30.9
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 4.0e-07 60.1 112 40.2
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 5.2e-07 59.7 102 38.2
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 5.2e-07 59.7 109 43.1
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 6.8e-07 59.3 165 30.3
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 8.8e-07 58.9 178 33.1
Nn4g26113 Nelumbo nucifera HOM05D002685 ORTHO05D001487 8.8e-07 58.9 87 46.0
Actinidia30619 Actinidia chinensis HOM05D002685 ORTHO05D001487 1.2e-06 58.5 51 58.8
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 1.2e-06 58.5 134 37.3
Potri.016G014900 Populus trichocarpa HOM05D002685 ORTHO05D001487 1.2e-06 58.5 164 29.3
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 1.2e-06 58.5 109 42.2
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 1.5e-06 58.2 109 43.1
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 2.0e-06 57.8 117 34.2
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 2.0e-06 57.8 111 39.6
Duzib052G1163 Durio zibethinus HOM05D002685 ORTHO05D001487 2.0e-06 57.8 63 47.6
Sabra16G0017000 Salix brachista HOM05D002685 ORTHO05D001487 2.0e-06 57.8 164 29.9
Os02g0719700 Oryza sativa ssp. japonica HOM05D002685 ORTHO05D001487 2.6e-06 57.4 121 35.5
CDE02G4607 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 3.4e-06 57.0 310 26.8
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 3.4e-06 57.0 111 36.9
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 3.4e-06 57.0 153 32.7
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 3.4e-06 57.0 109 43.1
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 4.4e-06 56.6 105 37.1
Nn8g41103 Nelumbo nucifera HOM05D002685 ORTHO05D001487 4.4e-06 56.6 311 26.0
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 4.4e-06 56.6 113 38.1
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 5.7e-06 56.2 171 33.9
Nn1g07360 Nelumbo nucifera HOM05D002685 ORTHO05D001487 5.7e-06 56.2 142 33.8
Ah.09g234250 Amaranthus hybridus HOM05D002685 ORTHO05D001487 7.5e-06 55.8 108 34.3
CDE05G2469 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 7.5e-06 55.8 118 41.5
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 7.5e-06 55.8 133 35.3
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 7.5e-06 55.8 123 36.6
Haze_06918 Corylus avellana HOM05D002685 ORTHO05D001487 9.8e-06 55.5 114 34.2
Haze_06923 Corylus avellana HOM05D002685 ORTHO05D001487 9.8e-06 55.5 114 34.2
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 9.8e-06 55.5 119 38.7
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 9.8e-06 55.5 120 36.7


User provided reference genes

Program Settings