Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1904.8 931 100.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1713.4 932 90.1
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1561.6 933 82.4
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1351.3 938 70.9
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1333.9 941 70.0
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1317.0 933 70.0
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1316.6 937 69.3
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1316.6 937 69.3
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1292.3 934 68.6
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 1248.0 940 66.0
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 1246.5 939 66.1
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1228.4 940 65.9
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1115.5 772 70.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 4.6e-276 954.9 944 52.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 7.3e-274 947.6 939 52.7
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 3.1e-264 915.6 900 53.6
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 1.3e-251 873.6 934 50.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.4e-245 853.6 913 48.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.9e-245 853.2 907 49.1
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 2.7e-244 849.4 914 48.1
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 6.2e-241 838.2 908 48.3
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 4.0e-240 835.5 916 48.1
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.5e-239 833.6 912 48.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 9.9e-239 830.9 902 48.9
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 6.4e-238 828.2 854 49.9
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.6e-235 818.1 911 47.0
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-234 816.6 911 46.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.6e-234 814.3 911 46.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.8e-232 810.1 906 46.7
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.4e-232 809.7 911 46.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 1.5e-231 807.0 956 46.5
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 6.2e-225 785.0 917 46.3
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 4.0e-224 782.3 896 46.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 5.3e-224 781.9 909 46.3
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 2.6e-223 779.6 899 47.1
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 7.6e-223 778.1 909 45.8
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.0e-222 777.7 903 46.3
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 8.4e-222 774.6 892 46.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 1.1e-221 774.2 916 46.4
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.5e-221 773.1 909 45.8
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 9.6e-218 761.1 921 45.5
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 6.3e-217 758.4 823 49.6
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 1.1e-216 757.7 908 44.5
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 2.5e-213 746.5 809 48.2
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.2e-212 744.2 915 42.7
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 4.1e-208 729.2 910 43.2
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 3.6e-204 716.1 867 45.1
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 6.1e-204 715.3 912 42.4
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 7.9e-204 714.9 941 42.8
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.3e-201 707.6 926 42.0
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.2e-201 706.8 901 42.1
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 5.0e-198 695.7 911 41.3
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 5.0e-198 695.7 901 41.2
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 8.5e-198 694.9 839 43.7
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 1.4e-197 694.1 837 44.7
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.2e-196 691.0 858 43.8
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.3e-195 686.8 902 42.5
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.4e-192 676.8 861 43.7
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 4.1e-192 676.0 833 43.5
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 6.5e-190 668.7 915 39.5
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 2.1e-188 663.7 897 40.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.8e-187 660.6 793 45.0
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 3.5e-183 646.4 864 42.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.9e-182 643.3 1178 34.0
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 5.5e-181 639.0 695 47.8
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 9.4e-181 638.3 946 39.3
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.2e-179 632.5 640 50.3
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.6e-178 630.2 836 41.3
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 5.7e-178 629.0 847 41.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.7e-177 627.5 705 49.2
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.8e-176 624.0 927 38.9
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 4.5e-175 619.4 834 42.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.9e-174 616.7 892 39.5
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.5e-174 615.5 740 45.1
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 3.2e-173 613.2 828 41.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.7e-172 610.1 915 39.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.4e-171 607.8 856 40.5
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 3.4e-170 603.2 801 42.6
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.8e-170 601.7 835 41.1
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.8e-169 600.1 865 40.5
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 2.8e-169 600.1 939 38.2
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 7.0e-168 595.5 819 41.8
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 3.5e-167 593.2 842 40.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 7.7e-167 592.0 828 40.6
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 4.3e-165 586.3 845 39.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.8e-164 583.6 909 38.5
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 4.1e-160 569.7 935 37.6
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.3e-158 564.7 856 39.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 9.5e-157 558.5 947 35.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.6e-154 550.4 624 47.0
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 4.3e-149 533.1 857 37.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.3e-145 521.5 831 37.2
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 5.8e-138 496.1 842 36.2
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.2e-129 467.6 901 33.5
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.1e-123 448.7 906 31.8
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.8e-108 397.5 433 47.1
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.1e-107 395.6 430 48.6
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 8.7e-94 349.4 527 38.7
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 9.7e-93 345.9 617 36.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.7e-87 327.8 909 28.8
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.0e-73 282.7 538 32.5
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 4.8e-68 263.8 856 28.3
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 4.8e-68 263.8 458 34.1
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 8.8e-62 243.0 151 77.5
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 4.8e-60 237.3 845 25.1
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.5e-58 231.1 299 44.1
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 5.4e-51 207.2 661 26.3
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.3e-48 198.0 770 25.2
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.4e-46 192.6 130 68.5
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 3.0e-41 174.9 238 40.8
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.0e-35 153.7 115 65.2
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.8e-20 104.8 222 33.8
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 9.9e-13 80.1 101 41.6
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 9.3e-11 73.6 308 27.3
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.5e-10 71.6 78 44.9


User provided reference genes

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