Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 2296.2 1196 100.0
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 2105.9 1196 90.6
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1884.8 1194 82.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1877.1 1197 81.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1836.2 1198 80.5
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1831.2 1182 81.0
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1817.7 1200 79.8
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1798.5 1222 79.0
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1798.5 1222 79.0
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1793.9 1165 80.6
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1684.1 1207 74.5
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1679.8 1214 74.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1663.3 1207 74.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1609.0 1196 74.1
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1584.3 1229 70.2
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1568.9 1255 67.6
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1563.1 1139 73.7
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1558.5 1229 69.0
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1522.3 1230 67.7
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1512.7 1218 67.5
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1511.1 1224 67.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1509.2 1229 66.3
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1224 67.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1229 66.5
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1505.7 1229 66.4
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1494.9 1170 69.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1493.8 1256 65.6
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1493.4 1220 67.1
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1485.3 1223 67.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1483.4 1160 69.1
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1481.8 1156 69.0
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1475.7 1218 66.4
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1473.4 1219 65.4
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1472.2 1208 67.1
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1471.4 1223 65.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1468.4 1208 66.3
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1468.4 1213 66.6
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1466.8 1226 66.7
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1465.3 1220 65.2
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1224 64.6
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1461.4 1208 66.7
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1459.9 1156 68.0
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1455.3 1222 66.3
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1237 65.6
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1446.4 1202 65.8
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1444.5 1218 64.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1231 64.8
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1442.9 1216 64.1
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1442.6 1228 65.1
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1215 65.1
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1431.0 1241 63.3
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1423.7 1241 63.0
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1419.8 1241 62.9
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1416.4 1219 64.1
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1241 62.8
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1217 64.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1412.1 1224 64.2
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1408.7 1219 63.8
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1407.9 1249 63.7
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1244 63.9
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1402.9 1215 63.9
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1402.5 1219 63.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1399.0 1219 63.3
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1396.3 1164 65.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1395.6 1176 63.7
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1392.1 1186 63.7
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1382.1 1223 63.1
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1377.5 1190 63.3
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1376.3 1187 63.4
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1371.3 1157 64.6
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1366.3 1265 61.1
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1366.3 1265 61.1
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1364.7 1251 61.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1362.1 1265 60.9
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1358.2 1217 62.1
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1354.7 1213 61.8
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1151 64.5
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1343.9 1226 60.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1342.4 1349 58.0
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1341.3 1226 60.8
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1333.2 1204 61.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1154 63.1
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1328.2 1222 59.9
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1319.7 1199 60.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1315.4 1145 62.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1307.0 1205 60.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1291.2 1163 61.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1289.6 1178 61.1
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1280.8 1236 59.0
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1276.5 1249 58.9
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1262.7 1247 58.7
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1258.8 1159 61.3
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1186.0 1034 61.9
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1155.6 1201 55.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1152.1 840 73.1
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1128.2 1082 59.0
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1109.7 1132 54.2
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1106.7 1198 55.1
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1100.1 1191 54.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1098.6 1080 57.3
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1080.5 745 75.7
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 2.0e-308 1062.8 980 60.7
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.0e-296 1023.8 1177 51.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 4.9e-291 1005.0 1147 51.2
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 9.9e-284 980.7 1233 50.1
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 9.0e-269 931.0 1141 48.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.9e-259 899.4 767 64.8
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 7.2e-258 894.8 689 68.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 1.9e-250 870.2 947 51.3
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-246 855.1 679 67.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 5.5e-226 788.9 1263 41.3
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.3e-224 783.5 637 64.2
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 8.9e-216 755.0 1282 39.4
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 8.9e-216 755.0 673 61.1
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.1e-208 729.9 695 59.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.9e-205 720.7 642 61.4
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.6e-204 717.6 602 66.3
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 8.1e-201 705.3 614 61.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.5e-196 689.9 1168 40.4
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 3.8e-182 643.3 1150 38.3
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 9.3e-181 638.6 598 58.7
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-167 595.1 522 60.7
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.3e-146 523.5 463 62.2
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.7e-145 520.4 462 62.3
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 2.0e-135 488.0 430 62.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 3.0e-131 474.2 1520 28.8
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.3e-123 448.0 351 69.2
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 7.0e-112 409.8 409 59.4
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.6e-111 408.7 393 60.8
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 9.2e-96 356.3 421 48.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.9e-89 334.7 262 71.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.6e-85 320.5 333 54.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 4.4e-82 310.8 467 44.1
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-78 297.4 398 46.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.3e-77 294.7 1148 27.9
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-76 292.4 297 53.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 9.9e-74 283.1 225 62.2
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 8.7e-62 243.4 241 55.6
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 7.1e-56 223.8 130 88.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.6e-55 221.1 213 57.7
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 3.7e-52 211.5 179 59.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-49 200.7 210 53.3
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.5e-48 197.6 208 53.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-47 194.9 208 52.9
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-47 194.1 204 52.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.0e-41 176.8 170 56.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-38 164.1 134 59.7
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 8.7e-38 163.7 171 56.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.7e-37 161.0 130 60.8
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 8.2e-36 157.1 130 60.0
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.8e-35 156.0 127 59.8
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-33 148.7 128 67.2
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-29 136.0 187 47.6
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.3e-28 133.3 106 59.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-26 126.7 111 55.0
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-26 126.3 108 57.4
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-20 106.3 187 42.2
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.1e-19 102.1 64 79.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.1e-19 102.1 154 44.8
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.9e-17 95.5 61 72.1
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.1e-16 93.6 222 36.5
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.0e-15 87.4 96 56.2
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-13 83.6 95 54.7
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 9.7e-13 80.5 83 61.4
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.7e-12 79.7 235 30.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.8e-11 76.3 149 40.9
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 9.1e-11 73.9 121 34.7
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.5e-08 65.9 60 60.0
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 3.6e-07 62.0 74 48.6
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 6.1e-07 61.2 134 38.1


User provided reference genes

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