Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.0e-119 432.6 232 100.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.9e-114 416.0 205 99.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.2e-110 402.5 205 95.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.8e-109 399.4 205 95.1
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.2e-98 362.1 200 88.5
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.3e-96 355.9 225 78.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.4e-95 352.1 199 86.4
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 7.5e-95 350.9 210 82.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.3e-94 350.1 199 84.9
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.3e-94 350.1 201 85.1
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.9e-94 348.2 204 83.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.9e-94 348.2 205 83.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.1e-93 347.1 200 84.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.8e-93 346.3 208 80.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 3.1e-93 345.5 204 84.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.1e-93 345.1 200 84.0
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.6e-92 343.2 210 81.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.6e-92 343.2 207 82.6
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.6e-92 343.2 200 83.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.3e-91 339.3 202 83.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.9e-91 339.0 202 81.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.8e-91 338.6 201 83.1
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 8.6e-91 337.4 206 81.6
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.5e-90 336.7 200 81.0
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.5e-90 335.9 200 81.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.3e-90 335.1 202 83.2
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.3e-90 335.1 203 81.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.3e-90 335.1 200 82.0
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 9.5e-90 334.0 206 79.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.5e-90 334.0 203 81.3
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.2e-89 333.6 202 79.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.6e-89 333.2 195 82.6
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.6e-89 333.2 211 78.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 6.1e-89 331.3 205 79.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.1e-89 331.3 225 74.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.1e-89 331.3 225 74.7
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 6.1e-89 331.3 201 80.6
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.1e-89 331.3 199 80.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.0e-89 330.9 203 80.3
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-88 330.5 205 79.0
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.3e-88 329.3 226 75.2
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.0e-88 328.6 200 79.5
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.0e-88 328.6 225 74.2
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-88 328.2 225 74.2
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.2e-88 328.2 201 78.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.2e-88 328.2 201 78.6
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.2e-88 328.2 201 78.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 5.2e-88 328.2 208 77.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-87 326.2 228 75.9
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-87 326.2 228 75.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-87 326.2 225 73.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.4e-87 325.5 200 78.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.4e-87 325.5 205 77.1
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.5e-87 324.3 202 77.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.9e-86 322.4 200 78.5
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.9e-86 322.4 200 79.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.9e-86 321.6 200 78.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 4.9e-86 321.6 200 77.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 6.4e-86 321.2 204 75.5
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-85 320.5 209 77.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.4e-85 318.2 200 77.0
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.7e-84 315.8 204 77.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.7e-84 315.8 204 77.9
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.7e-84 315.8 201 77.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 4.6e-84 315.1 209 74.6
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 5.9e-84 314.7 195 77.9
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 5.9e-84 314.7 197 80.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 7.3e-82 307.8 198 74.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.2e-81 307.0 206 73.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.1e-81 306.2 201 73.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 4.7e-81 305.1 198 73.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 6.2e-81 304.7 198 73.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.0e-80 302.0 200 72.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.2e-80 301.6 200 73.5
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 8.9e-80 300.8 204 72.1
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.2e-79 300.4 199 74.4
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.5e-79 300.1 204 69.6
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.4e-79 298.9 196 75.0
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.4e-79 298.5 197 71.1
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 5.8e-79 298.1 192 75.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 9.8e-79 297.4 191 75.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.1e-77 293.9 191 72.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-77 293.5 195 71.8
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 7.0e-77 291.2 201 75.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.6e-76 290.0 204 69.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-76 289.3 201 75.1
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.6e-76 288.5 200 72.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.3e-75 287.0 191 70.2
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.0e-75 285.8 191 72.8
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.9e-75 285.4 200 69.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 5.0e-75 285.0 188 71.8
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 8.6e-75 284.3 201 69.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.2e-73 280.4 199 69.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.7e-73 278.5 201 69.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 8.1e-73 277.7 200 70.5
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.3e-72 276.2 200 70.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 5.2e-72 275.0 201 67.7
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 5.2e-72 275.0 203 68.0
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.9e-72 274.2 197 70.1
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.2e-71 273.9 203 68.5
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.0e-71 273.1 199 70.4
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.0e-71 273.1 197 69.5
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.8e-71 271.6 190 68.9
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 5.8e-71 271.6 190 71.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.7e-70 270.0 199 66.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 4.9e-70 268.5 203 67.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 66.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 66.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 66.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 66.5
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 66.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.2e-69 265.8 203 67.5
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 7.1e-69 264.6 196 69.9
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.2e-69 264.2 203 66.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-68 263.1 203 65.0
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-68 262.7 203 65.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.6e-68 261.9 203 65.0
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-67 260.0 204 64.7
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-66 257.3 197 63.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.5e-66 256.1 193 64.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.3e-66 255.8 194 63.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.1e-65 251.1 203 63.5
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.7e-62 243.4 203 65.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-61 239.6 202 61.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.1e-60 236.5 207 60.4
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 2.5e-58 229.6 166 69.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.5e-58 229.6 134 79.9
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-57 226.9 177 66.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.8e-55 218.4 189 57.1
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.9e-54 215.3 168 64.9
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.9e-50 203.4 203 55.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 6.9e-48 194.9 112 83.0
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 4.2e-45 185.7 127 72.4
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.3e-42 176.0 196 50.5
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 8.1e-41 171.4 112 68.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 7.6e-39 164.9 103 71.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.4e-37 159.8 97 74.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.7e-36 156.4 93 76.3
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.4e-19 100.9 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 8.2e-17 91.7 51 82.4
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.7e-09 66.2 150 28.7
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.0e-06 58.2 103 31.1
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.0e-06 58.2 103 31.1
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 2.2e-06 57.0 96 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 8.5e-06 55.1 138 28.3


User provided reference genes

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