Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.0e-71 272.3 138 100.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.0e-63 245.7 138 88.4
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.9e-53 212.6 137 76.6
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.1e-48 196.8 139 74.8
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.1e-37 160.2 143 62.2
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 4.2e-37 158.3 134 64.9
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 2.0e-34 149.4 135 61.5
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 2.0e-34 149.4 135 61.5
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 1.7e-33 146.4 133 62.4
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 8.3e-33 144.1 139 59.0
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.8e-32 142.9 142 57.0
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 5.4e-32 141.4 129 60.5
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 1.2e-31 140.2 132 61.4
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.6e-31 139.8 139 57.6
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.0e-30 137.1 148 58.1
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.0e-30 137.1 148 58.1
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.0e-30 137.1 135 59.3
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.0e-30 137.1 137 52.6
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 2.9e-30 135.6 127 59.8
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 5.0e-30 134.8 135 60.0
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 6.6e-30 134.4 137 55.5
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 9.5e-29 130.6 128 58.6
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.6e-28 129.8 137 52.6
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 6.1e-28 127.9 128 57.8
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 4.0e-27 125.2 134 51.5
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 6.8e-27 124.4 139 49.6
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.1e-24 117.1 135 52.6
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.4e-24 115.9 130 50.8
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 9.2e-24 114.0 131 53.4
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 1.6e-23 113.2 127 51.2
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.0e-22 110.5 136 44.1
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.7e-22 109.8 128 50.0
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 2.9e-22 109.0 127 46.5
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 6.6e-22 107.8 134 44.8
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 4.3e-21 105.1 136 47.1
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.3e-21 105.1 128 46.9
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.6e-20 103.2 137 46.7
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.6e-20 103.2 128 46.1
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.6e-20 103.2 134 44.0
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.1e-20 102.8 133 45.1
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 3.6e-20 102.1 128 45.3
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 3.6e-20 102.1 126 46.8
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 4.7e-20 101.7 137 46.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.0e-19 100.5 139 43.9
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.3e-19 99.4 134 44.0
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.2e-19 98.2 134 44.0
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.5e-18 96.7 132 43.9
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.0e-18 96.3 136 43.4
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.8e-18 94.7 137 40.1
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.8e-18 94.7 137 41.6
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.7e-17 93.2 135 43.7
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 3.7e-17 92.0 132 43.9
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 6.4e-17 91.3 127 47.2
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.3e-17 90.9 126 41.3
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.9e-16 89.7 136 44.1
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.9e-16 89.7 137 43.8
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.2e-16 89.0 126 44.4
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.1e-16 88.6 142 41.5
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 4.1e-16 88.6 128 43.0
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.0e-16 87.8 126 43.7
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.0e-16 87.8 126 43.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.2e-15 87.0 127 42.5
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.6e-15 86.7 129 41.9
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.6e-15 86.7 120 40.0
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.0e-15 86.3 131 39.7
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.7e-15 85.9 131 37.4
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 3.5e-15 85.5 139 41.0
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-14 83.6 131 41.2
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.3e-14 83.6 138 38.4
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.3e-14 83.6 132 39.4
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 123 37.4
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-13 79.7 134 37.3
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-13 79.3 115 40.0
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-13 79.3 120 45.8
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 3.3e-13 79.0 138 37.7
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.3e-13 78.6 134 37.3
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.6e-13 78.2 140 38.6
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.6e-13 78.2 131 38.9
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 5.6e-13 78.2 136 39.7
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 7.3e-13 77.8 130 39.2
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.5e-13 77.4 136 39.7
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.2e-12 77.0 134 37.3
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 4.7e-12 75.1 126 38.9
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.2e-12 74.7 133 37.6
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 8.1e-12 74.3 129 39.5
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 8.1e-12 74.3 141 39.7
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 8.1e-12 74.3 125 40.0
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.1e-11 73.9 131 38.2
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.4e-11 73.6 99 45.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.8e-11 73.2 124 41.9
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 6.8e-11 71.2 129 39.5
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.9e-11 70.9 106 40.6
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.9e-11 70.9 106 40.6
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-10 70.5 127 37.8
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.5e-10 70.1 119 38.7
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 2.0e-10 69.7 119 41.2
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-10 69.7 114 41.2
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-10 69.7 114 41.2
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.6e-10 69.3 135 36.3
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 2.6e-10 69.3 135 37.0
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 3.4e-10 68.9 70 52.9
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.4e-10 68.9 136 35.3
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.4e-10 68.6 129 34.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 4.4e-10 68.6 137 38.0
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 5.8e-10 68.2 131 40.5
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.5e-10 67.8 130 36.2
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.3e-09 67.0 120 36.7
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 2.2e-09 66.2 126 36.5
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-09 65.9 136 33.1
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 2.9e-09 65.9 122 41.0
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.7e-09 65.5 128 32.0
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.7e-09 65.5 136 33.1
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 4.9e-09 65.1 136 33.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.9e-09 65.1 136 33.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.9e-09 65.1 136 33.1
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 4.9e-09 65.1 126 36.5
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 8.3e-09 64.3 131 40.5
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 8.3e-09 64.3 134 38.1
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-08 63.9 136 32.4
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.4e-08 63.5 141 34.0
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 1.9e-08 63.2 92 38.0
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 2.4e-08 62.8 135 37.8
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 3.2e-08 62.4 133 33.1
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 4.1e-08 62.0 122 38.5
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 9.2e-08 60.8 135 36.3
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.2e-07 60.5 91 40.7
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.1e-07 59.7 123 32.5
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.7e-07 59.3 139 31.7
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 2.7e-07 59.3 133 33.1
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.5e-07 58.9 132 34.8
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.6e-07 58.5 131 35.1
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 6.0e-07 58.2 133 34.6
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 6.0e-07 58.2 126 35.7
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 7.8e-07 57.8 116 33.6
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.3e-06 57.0 97 39.2
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 2.3e-06 56.2 82 39.0
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 2.3e-06 56.2 115 34.8
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 3.0e-06 55.8 129 31.0
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 3.0e-06 55.8 129 31.0
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 3.9e-06 55.5 125 33.6
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.9e-06 55.5 138 34.1
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.9e-06 55.5 138 34.8
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 5.1e-06 55.1 132 31.8
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.1e-06 55.1 138 33.3
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 6.6e-06 54.7 115 34.8
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 6.6e-06 54.7 135 34.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 8.6e-06 54.3 138 33.3


User provided reference genes

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