Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 2.7e-270 935.3 665 100.0
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 4.3e-196 688.7 614 79.8
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 6.5e-192 674.9 614 76.2
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 3.5e-153 546.2 641 55.2
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 8.6e-152 541.6 659 58.0
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 8.6e-152 541.6 659 58.0
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 2.0e-148 530.4 525 80.8
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 2.6e-148 530.0 635 55.1
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 2.2e-147 526.9 636 54.1
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 2.9e-147 526.6 636 67.3
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 2.9e-147 526.6 632 54.4
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 1.1e-143 514.6 628 57.6
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 4.0e-133 479.6 628 55.4
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 1.3e-102 378.3 642 52.6
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 3.7e-102 376.7 639 44.4
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 4.8e-102 376.3 631 53.4
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 4.8e-102 376.3 594 49.7
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 4.8e-102 376.3 639 43.3
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 8.1e-102 375.6 635 43.0
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 2.4e-101 374.0 593 49.4
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 1.2e-100 371.7 641 44.6
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.9e-99 367.1 635 47.6
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.2e-97 361.7 629 48.0
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 1.3e-96 358.2 620 50.5
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 1.8e-96 357.8 636 49.2
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 3.9e-96 356.7 626 51.8
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 8.7e-96 355.5 610 44.9
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.1e-95 355.1 619 45.6
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.9e-95 354.4 603 42.1
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 5.8e-92 342.8 584 43.3
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.3e-91 341.7 627 43.7
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 2.9e-91 340.5 600 57.7
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.8e-91 340.1 607 45.5
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 8.4e-91 339.0 592 50.2
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 1.1e-90 338.6 635 42.4
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 5.5e-90 336.3 623 44.9
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 2.7e-89 334.0 622 38.6
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 3.5e-89 333.6 619 41.0
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 1.0e-88 332.0 601 48.6
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 3.9e-88 330.1 619 54.6
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 1.1e-85 322.0 585 55.4
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 6.9e-85 319.3 597 51.8
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.2e-84 318.5 597 52.3
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.4e-84 317.0 597 52.1
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 3.4e-84 317.0 637 52.7
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.0e-83 315.5 597 52.1
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 6.5e-83 312.8 641 48.8
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 7.9e-81 305.8 621 46.4
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 7.9e-81 305.8 634 46.2
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 1.8e-80 304.7 607 44.0
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 3.0e-80 303.9 603 38.8
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 5.1e-80 303.1 626 47.1
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 2.5e-79 300.8 626 47.8
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 4.3e-79 300.1 625 47.8
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 2.6e-76 290.8 630 45.9
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 1.0e-75 288.9 644 42.1
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 1.6e-73 281.6 508 45.5
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 4.7e-73 280.0 594 40.2
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 1.4e-72 278.5 633 52.1
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 8.8e-72 275.8 636 51.7
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 1.4e-69 268.5 623 37.7
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 5.3e-69 266.5 625 35.7
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 5.3e-69 266.5 623 37.2
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 7.0e-69 266.2 585 42.7
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.6e-68 264.2 349 50.4
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 7.7e-68 262.7 574 42.9
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 1.0e-67 262.3 591 48.7
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 3.2e-66 257.3 620 40.8
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 5.5e-66 256.5 638 46.9
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 9.4e-66 255.8 588 38.1
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 2.7e-65 254.2 637 46.3
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 4.7e-65 253.4 585 34.5
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 1.5e-63 248.4 476 47.1
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 2.6e-63 247.7 623 47.4
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 7.4e-63 246.1 617 32.7
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 4.8e-62 243.4 641 37.1
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 8.2e-62 242.7 596 49.8
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 1.4e-61 241.9 587 37.6
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.1e-61 240.7 618 35.0
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 4.1e-61 240.4 570 41.8
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.0e-59 235.7 619 39.9
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.0e-59 235.7 630 39.7
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 2.9e-59 234.2 600 41.8
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 1.1e-58 232.3 617 39.1
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 4.0e-56 223.8 616 31.8
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 6.8e-56 223.0 621 31.6
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 3.4e-55 220.7 616 37.2
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 1.1e-53 215.7 636 44.7
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 3.1e-53 214.2 603 34.3
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 1.2e-52 212.2 576 45.1
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 3.5e-52 210.7 613 30.8
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.3e-51 208.8 619 33.8
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 1.1e-50 205.7 571 43.6
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 3.2e-50 204.1 615 32.2
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 4.2e-50 203.8 399 53.9
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 1.6e-49 201.8 633 31.3
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 2.7e-49 201.1 618 35.3
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 3.6e-49 200.7 628 35.8
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 3.6e-49 200.7 589 34.0
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 4.7e-49 200.3 580 32.6
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 3.0e-48 197.6 633 30.6
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 6.8e-48 196.4 310 44.5
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 8.8e-48 196.1 347 61.7
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 4.4e-47 193.7 628 34.7
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 2.2e-46 191.4 620 44.2
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 2.8e-46 191.0 643 29.4
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 3.7e-46 190.7 620 31.0
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 4.1e-45 187.2 620 30.3
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 2.7e-44 184.5 564 47.9
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 5.0e-43 180.3 577 31.5
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 6.6e-43 179.9 579 37.0
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 6.6e-43 179.9 585 30.8
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 6.6e-43 179.9 482 36.7
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 7.2e-42 176.4 549 31.3
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 1.2e-41 175.6 583 30.0
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 3.6e-41 174.1 490 32.2
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 8.0e-41 172.9 580 30.2
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 2.3e-40 171.4 578 30.8
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 1.7e-38 165.2 664 30.7
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 3.7e-38 164.1 588 30.8
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 7.0e-37 159.8 584 32.9
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 4.6e-36 157.1 578 35.6
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.6e-36 157.1 646 32.0
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 2.9e-35 154.5 559 42.4
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 2.1e-33 148.3 565 39.3
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 3.6e-33 147.5 574 30.1
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 1.7e-30 138.7 629 29.3
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 2.4e-29 134.8 584 29.3
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 5.4e-29 133.7 197 44.2
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 5.4e-29 133.7 579 35.2
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 2.0e-28 131.7 492 28.7
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 1.8e-24 118.6 551 38.5
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 1.1e-21 109.4 176 44.9
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.1e-21 107.5 190 43.2
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.1e-20 105.1 116 52.6
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.7e-20 104.8 201 37.3
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 3.5e-20 104.4 492 28.3
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 1.3e-19 102.4 524 30.9
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 5.1e-19 100.5 592 32.6
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 1.2e-17 95.9 436 32.8
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 1.4e-16 92.4 311 29.3
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.2e-15 89.4 521 28.6
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 2.0e-15 88.6 192 37.0
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 1.9e-13 82.0 353 37.1
Glyma.18G156550 Glycine max HOM05D004905 ORTHO05D005456 4.6e-12 77.4 104 45.2
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 1.3e-11 75.9 546 28.9
Actinidia15899 Actinidia chinensis HOM05D004905 ORTHO05D005456 9.6e-10 69.7 104 47.1
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 2.8e-09 68.2 662 25.2
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 8.9e-08 63.2 94 44.7
Ah.16g101540 Amaranthus hybridus HOM05D004905 ORTHO05D005456 2.0e-07 62.0 142 35.2
Sp6g17740 Schrenkiella parvula HOM05D001827 ORTHO05D001790 2.6e-07 61.6 196 29.6
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 7.6e-07 60.1 633 21.8
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 9.9e-07 59.7 71 56.3
CSS0038969 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 3.8e-06 57.8 334 24.9
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 6.4e-06 57.0 335 24.8
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 6.4e-06 57.0 187 31.6
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 8.4e-06 56.6 644 22.0


User provided reference genes

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