Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1876.3 1004 100.0
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1639.0 968 91.2
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1621.3 968 87.0
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1464.1 996 77.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1431.0 996 76.7
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1428.3 998 75.8
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1417.1 968 80.4
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1396.7 968 77.4
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1396.7 968 77.4
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1372.8 971 77.9
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1303.1 989 73.4
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1283.9 968 70.7
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1251.1 977 73.1
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1246.5 974 69.2
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1244.6 967 68.5
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1242.3 964 70.4
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1239.9 969 69.3
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1239.2 966 66.7
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1237.6 968 67.8
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1235.3 972 67.3
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1234.6 971 69.5
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1233.0 960 69.8
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1232.6 967 67.1
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1231.5 966 68.3
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1228.4 968 67.4
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1224.9 967 66.8
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1224.2 968 67.0
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1223.0 960 69.5
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1221.5 989 67.8
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1221.1 961 69.6
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1205.3 883 70.9
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1201.0 971 68.6
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1200.7 962 67.8
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1200.3 967 68.6
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1192.6 875 71.9
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1189.1 968 68.6
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1184.9 972 65.8
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1181.4 888 69.0
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1178.7 970 64.3
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1176.8 969 66.7
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1174.5 970 64.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1174.1 972 67.8
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1166.8 970 63.6
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1165.2 966 66.9
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1163.3 992 65.4
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1161.0 978 66.4
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1160.2 1030 65.1
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1156.4 998 64.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1152.1 965 66.2
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1146.3 1017 64.8
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1145.6 973 68.1
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1144.0 973 67.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1142.5 969 63.6
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 0.0e+00 1139.8 724 78.6
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1137.9 999 64.8
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1132.1 993 64.4
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1130.9 893 66.3
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1130.9 893 66.2
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1130.9 976 63.8
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1128.6 792 74.1
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1128.6 967 65.5
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1126.3 1048 62.6
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1125.9 808 72.6
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1124.8 893 66.4
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1124.0 893 65.7
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1124.0 893 65.7
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1123.2 889 66.1
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1119.0 995 61.7
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1117.4 896 65.5
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1114.4 966 62.2
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1113.6 990 62.6
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1110.9 898 65.5
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1109.7 889 65.7
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1108.6 896 65.3
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1101.3 874 65.6
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1091.6 974 60.7
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1089.7 892 64.9
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1084.3 804 74.5
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1083.6 972 60.6
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1080.9 978 63.6
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1079.7 978 63.7
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.9e-312 1073.9 975 59.8
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 2.0e-309 1065.8 975 59.7
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 4.1e-307 1058.1 892 63.2
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 8.0e-303 1043.9 953 62.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 5.2e-302 1041.2 964 59.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 1.1e-299 1033.5 806 70.7
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.9e-296 1022.7 935 62.2
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 8.1e-295 1017.3 947 59.0
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 8.3e-292 1007.3 808 68.6
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 1.9e-291 1006.1 903 59.4
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 2.7e-290 1002.3 963 57.5
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 6.0e-290 1001.1 976 57.0
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 3.0e-289 998.8 705 74.2
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 5.6e-288 994.6 850 67.4
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 2.3e-286 989.2 875 62.4
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.9e-280 969.5 845 64.6
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 3.6e-279 965.3 901 58.8
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 1.5e-277 959.9 655 74.5
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 4.6e-274 948.3 1135 50.2
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 1.7e-273 946.4 788 64.8
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.1e-267 927.2 977 57.9
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 4.6e-266 921.8 975 54.1
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.0e-265 920.6 835 62.5
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 7.1e-259 897.9 968 54.0
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.9e-256 889.8 809 59.7
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.8e-255 885.9 737 63.5
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.2e-250 870.5 739 62.7
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 7.4e-240 834.7 688 64.4
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 3.7e-239 832.4 805 58.6
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.4e-238 830.5 924 52.1
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 3.1e-238 829.3 814 59.2
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 2.6e-237 826.2 760 62.1
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 7.7e-237 824.7 857 52.6
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 3.8e-236 822.4 557 74.1
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.4e-217 760.8 718 55.3
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.6e-200 703.4 615 64.9
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.3e-196 691.0 608 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.3e-188 664.5 653 54.2
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.3e-188 663.7 857 45.2
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.0e-184 650.6 875 44.2
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.0e-181 640.6 595 61.7
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.2e-178 631.3 707 50.5
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.8e-177 627.5 749 45.8
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 6.4e-175 619.0 432 74.5
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 3.8e-167 593.2 397 75.6
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 6.4e-159 565.8 509 58.3
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 7.1e-158 562.4 408 70.3
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 6.9e-137 492.7 409 63.8
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 4.5e-120 436.8 335 64.8
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.0e-119 435.6 373 64.9
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.7e-119 434.9 344 70.3
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 4.7e-109 400.2 406 63.8
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.0e-108 399.1 410 56.3
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 3.8e-95 354.0 449 47.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 3.6e-93 347.4 445 47.0
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 9.1e-89 332.8 221 73.3
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.1e-85 321.6 444 46.4
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.1e-85 321.6 444 46.4
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.0e-71 273.9 197 69.5
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 4.7e-69 267.3 158 86.7
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 1.6e-56 225.7 144 77.1
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 4.6e-56 224.2 375 38.4
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 2.3e-55 221.9 147 76.9
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 1.9e-54 218.8 158 69.0
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 5.6e-54 217.2 164 65.2
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 8.1e-53 213.4 312 44.6
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 2.4e-52 211.8 145 72.4
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 3.1e-52 211.5 144 74.3
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 1.3e-50 206.1 148 71.6
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 9.2e-49 199.9 167 62.9
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 4.7e-45 187.6 145 64.8
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-42 179.1 202 51.5
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 2.9e-42 178.3 151 60.9
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 3.0e-39 168.3 119 69.7
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 1.3e-37 162.9 92 87.0
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.6e-35 153.7 192 65.6
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 1.6e-32 146.0 111 67.6
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.7e-32 145.2 84 84.5
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 1.9e-30 139.0 80 82.5
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-30 138.3 104 61.5
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.1e-29 135.6 155 48.4
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 2.4e-28 132.1 123 56.9
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.5e-27 129.4 188 46.3
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 3.4e-27 128.3 193 36.3
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.3e-23 115.5 143 67.8
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.9e-23 114.8 102 59.8
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 1.9e-22 112.5 70 80.0
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-21 109.8 93 61.3
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 1.8e-20 105.9 94 59.6
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 5.3e-20 104.4 88 59.1
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 4.5e-19 101.3 101 55.4
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 1.8e-15 89.4 70 68.6
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.1e-12 80.1 57 75.4
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.6e-11 75.5 200 40.0
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 3.4e-11 75.1 401 22.7
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 9.4e-09 67.0 84 44.0
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.5e-06 59.7 69 39.1


User provided reference genes

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