Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 7.8e-150 533.9 290 100.0
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.6e-118 429.9 292 81.2
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 2.5e-108 396.0 294 75.9
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 6.3e-107 391.3 290 75.5
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.5e-80 301.6 378 49.7
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 2.5e-79 299.7 291 61.5
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 6.1e-78 295.0 290 62.1
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 6.3e-75 285.0 218 71.6
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 8.2e-75 284.6 326 55.5
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.3e-72 277.3 291 59.1
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 2.2e-72 276.6 292 57.9
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 2.1e-70 270.0 291 58.1
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 4.8e-67 258.8 284 57.0
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 6.3e-67 258.5 336 50.3
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.5e-63 247.3 181 70.2
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.1e-62 243.4 151 78.8
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 3.6e-62 242.7 151 79.5
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 4.7e-62 242.3 214 61.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 4.7e-62 242.3 288 54.9
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 1.0e-61 241.1 287 52.3
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 1.0e-61 241.1 189 65.6
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.8e-61 240.4 134 91.0
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 5.2e-61 238.8 165 75.8
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 1.2e-60 237.7 239 58.6
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 3.4e-60 236.1 190 66.3
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.4e-60 235.7 217 60.4
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 7.5e-60 235.0 295 51.2
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 9.8e-60 234.6 297 47.8
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.7e-59 233.8 192 64.6
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 1.7e-59 233.8 393 41.7
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 6.3e-59 231.9 172 71.5
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 6.3e-59 231.9 290 52.4
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.1e-58 231.1 249 53.8
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.4e-58 230.7 166 73.5
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 2.4e-58 229.9 153 75.2
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 3.1e-58 229.6 210 59.0
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.4e-58 228.8 188 63.8
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 5.4e-58 228.8 190 65.3
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 9.2e-58 228.0 182 68.1
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.0e-57 226.9 168 73.2
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 2.7e-57 226.5 306 48.0
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 4.5e-57 225.7 149 74.5
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.8e-57 224.9 202 58.9
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 2.3e-56 223.4 291 47.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 2.9e-56 223.0 179 67.0
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 5.0e-56 222.2 172 65.7
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 1.1e-55 221.1 289 47.8
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.1e-55 221.1 281 49.8
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.5e-55 220.7 244 54.1
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.9e-55 220.3 242 54.1
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 2.5e-55 219.9 281 50.5
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.5e-55 219.9 280 52.5
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 4.3e-55 219.2 311 46.3
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 4.3e-55 219.2 275 50.9
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.3e-55 219.2 285 50.2
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 7.3e-55 218.4 301 46.2
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 7.3e-55 218.4 291 48.5
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 9.5e-55 218.0 309 47.2
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 9.5e-55 218.0 152 71.7
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.1e-54 216.9 178 63.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 2.1e-54 216.9 334 45.5
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 8.0e-54 214.9 149 71.8
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.0e-53 214.5 150 68.0
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.0e-53 214.5 150 68.0
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.0e-53 214.5 150 68.0
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.0e-53 214.5 150 68.0
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.0e-53 214.5 257 50.2
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 1.8e-53 213.8 297 48.5
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 2.3e-53 213.4 145 73.8
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 3.0e-53 213.0 313 47.0
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.0e-53 213.0 293 44.7
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 4.0e-53 212.6 151 66.9
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 4.0e-53 212.6 144 73.6
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 8.9e-53 211.5 330 44.8
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.0e-52 210.3 301 46.8
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.4e-52 209.5 286 47.2
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.4e-52 209.5 286 47.2
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 5.7e-52 208.8 287 43.9
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 9.8e-52 208.0 177 59.9
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 1.3e-51 207.6 149 70.5
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 3.7e-51 206.1 149 68.5
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 6.4e-51 205.3 313 44.4
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 6.4e-51 205.3 174 65.5
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.1e-50 204.5 300 46.3
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 4.1e-50 202.6 260 45.8
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 4.1e-50 202.6 294 44.6
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 5.4e-50 202.2 335 42.7
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.0e-50 201.8 198 55.1
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 9.2e-50 201.4 132 73.5
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 9.2e-50 201.4 182 61.0
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 9.2e-50 201.4 182 61.0
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.2e-50 201.4 335 42.7
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-49 200.3 141 72.3
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 5.9e-49 198.7 302 42.1
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 7.8e-49 198.4 335 41.8
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.0e-48 198.0 132 73.5
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.0e-48 196.4 134 71.6
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 5.0e-48 195.7 183 55.7
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 6.6e-48 195.3 293 47.1
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.1e-47 194.5 192 54.2
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.5e-47 194.1 254 46.5
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 4.3e-47 192.6 157 65.6
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.6e-46 190.7 291 45.4
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 3.6e-46 189.5 181 62.4
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 6.2e-46 188.7 354 40.4
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 8.0e-46 188.3 228 49.6
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 4.0e-45 186.0 264 46.6
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 5.2e-45 185.7 154 64.3
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 6.8e-45 185.3 345 40.9
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.2e-44 184.5 270 44.1
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.0e-44 183.7 154 64.3
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.0e-44 183.7 154 64.3
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 9.8e-44 181.4 287 45.3
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.4e-42 177.6 176 56.2
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.4e-42 177.6 181 59.1
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 4.1e-42 176.0 150 62.7
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 7.0e-42 175.3 136 65.4
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 7.0e-42 175.3 300 41.7
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 9.2e-42 174.9 224 47.3
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 2.0e-41 173.7 174 55.7
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.0e-41 173.7 134 64.2
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 3.5e-41 172.9 132 70.5
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.5e-41 172.9 126 68.3
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 1.7e-40 170.6 132 63.6
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.3e-39 166.0 179 54.7
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.7e-35 152.9 154 57.8
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.2e-33 147.9 144 55.6
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 5.6e-31 139.0 182 45.1
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.6e-30 137.5 100 72.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 1.8e-29 134.0 251 39.4
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 2.3e-29 133.7 132 50.0
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.5e-28 131.0 124 55.6
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.9e-27 126.7 165 44.8
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 1.1e-23 114.8 89 64.0
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 3.4e-20 103.2 136 43.4
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 6.4e-19 99.0 117 44.4
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 4.2e-18 96.3 254 37.8
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 2.7e-17 93.6 100 56.0
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 3.0e-16 90.1 133 36.8
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 5.6e-15 85.9 113 42.5
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 1.1e-13 81.6 84 57.1
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 3.1e-13 80.1 141 35.5
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 2.9e-11 73.6 57 63.2
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.3e-08 64.7 177 26.6
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 1.6e-06 57.8 146 29.5


User provided reference genes

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