Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-139 499.6 249 100.0
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.5e-133 479.6 249 96.8
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.6e-127 459.5 249 92.0
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.6e-114 416.4 250 84.0
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.3e-113 413.3 250 83.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.0e-97 359.0 246 72.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.8e-93 344.7 251 73.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.9e-92 341.7 251 72.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.4e-91 340.1 251 71.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 5.4e-91 338.2 254 70.1
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 5.4e-91 338.2 254 70.1
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 7.0e-91 337.8 251 70.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.7e-89 333.2 257 69.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.6e-85 319.3 256 67.6
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.5e-80 302.8 254 62.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.8e-79 299.3 253 64.4
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 6.8e-78 294.7 252 63.9
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-77 293.9 247 62.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.6e-77 292.7 247 60.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.3e-76 290.4 251 63.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.7e-76 290.0 242 62.4
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 7.1e-75 284.6 252 62.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 9.2e-75 284.3 249 60.2
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.2e-74 283.9 248 60.1
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.2e-74 283.9 255 58.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.7e-74 282.7 251 60.2
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.8e-74 281.2 255 56.9
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.3e-73 279.6 255 56.9
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.9e-73 278.9 250 58.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.1e-73 278.5 193 69.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.1e-72 277.3 234 59.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 9.6e-72 274.2 244 59.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.1e-71 273.1 244 59.0
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 8.1e-71 271.2 227 60.4
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.1e-71 271.2 255 57.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.4e-70 269.6 255 55.3
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.0e-70 267.7 246 60.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.2e-69 267.3 180 72.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-69 266.9 255 56.1
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.4e-69 265.8 240 57.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.8e-69 265.0 234 59.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.6e-69 264.6 183 72.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.6e-69 264.6 278 53.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.3e-68 263.8 253 56.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.2e-68 263.1 249 55.8
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.9e-68 262.7 249 55.8
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.9e-68 262.7 248 56.5
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.8e-68 262.3 249 55.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.4e-68 261.5 236 58.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 8.4e-68 261.2 237 59.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.1e-67 260.8 222 59.0
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.4e-67 258.5 247 55.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 5.4e-67 258.5 247 57.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 7.1e-67 258.1 207 61.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 7.1e-67 258.1 207 61.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 9.3e-67 257.7 235 60.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.6e-66 256.9 183 67.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.5e-66 255.8 243 55.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 7.8e-66 254.6 180 69.4
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.3e-65 253.1 210 60.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 2.3e-65 253.1 211 60.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.9e-65 252.3 210 60.0
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.9e-65 252.3 248 53.6
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.9e-65 252.3 143 86.7
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.1e-65 251.9 190 64.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.6e-65 251.5 249 51.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.6e-65 251.5 180 68.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.1e-64 250.8 242 55.4
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.5e-64 250.4 187 65.2
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.5e-64 250.4 241 54.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.5e-64 250.4 190 64.2
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.5e-64 250.4 235 57.9
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.5e-64 249.6 241 55.6
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.3e-64 248.1 222 56.8
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 9.6e-64 247.7 189 64.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 223 56.1
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.8e-63 246.1 178 66.3
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.8e-63 246.1 222 56.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.2e-63 245.0 218 59.2
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 252 51.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.4e-62 243.8 244 53.7
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.8e-62 243.4 176 67.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-62 243.4 176 65.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.8e-62 243.4 236 54.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.4e-62 243.0 189 61.9
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.0e-62 242.3 191 62.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 5.3e-62 241.9 247 53.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.3e-62 241.9 189 63.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.5e-61 240.4 242 53.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.6e-61 239.6 181 63.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-61 239.6 239 51.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.4e-61 239.2 184 63.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.9e-60 236.1 194 63.4
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.8e-60 235.7 175 68.6
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.4e-59 233.8 174 66.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.9e-59 233.4 148 75.7
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.4e-59 233.0 148 75.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 5.4e-59 231.9 253 52.6
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.6e-58 230.3 149 75.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.8e-57 226.9 248 50.8
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.1e-57 225.3 207 61.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 6.7e-57 224.9 272 47.1
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.1e-56 224.2 144 74.3
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-56 223.4 169 65.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.9e-56 223.4 175 63.4
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.3e-56 222.6 243 49.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.6e-56 221.9 164 70.1
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.4e-56 221.5 153 71.2
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 7.4e-56 221.5 157 70.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.3e-55 220.7 221 50.7
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 4.8e-55 218.8 134 77.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 8.1e-55 218.0 213 55.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-54 217.6 142 73.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-54 217.2 146 71.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-54 216.5 146 72.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.4e-54 216.5 140 72.9
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 4.9e-52 208.8 129 78.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 9.3e-51 204.5 170 66.5
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-50 203.8 178 56.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.0e-49 201.1 146 64.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.0e-49 201.1 206 50.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.8e-49 200.3 238 44.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.9e-49 199.1 179 52.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 8.7e-49 198.0 181 57.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.4e-46 190.7 142 66.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.4e-46 190.7 152 60.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.0e-46 189.1 145 60.0
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.5e-45 185.7 137 63.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.7e-44 183.7 200 52.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 5.5e-43 178.7 254 41.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.1e-42 176.8 161 55.3
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.6e-42 175.6 172 58.1
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-41 174.1 140 57.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-40 170.6 139 54.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.4e-40 168.3 161 55.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 5.3e-38 162.2 255 40.4
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 9.0e-38 161.4 177 50.3
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 9.0e-38 161.4 103 76.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.2e-35 151.8 142 60.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.6e-34 149.1 144 56.9
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.4e-33 147.5 180 47.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.0e-33 146.4 185 43.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.2e-27 126.3 159 48.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.6e-24 116.7 125 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-20 104.4 79 62.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-18 97.4 144 38.2
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-18 97.1 173 32.4
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 8.2e-15 85.1 131 33.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.4e-14 83.6 83 59.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.5e-13 79.3 151 33.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.8e-12 76.3 150 29.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.6e-10 69.7 142 28.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-09 68.2 152 31.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-09 67.8 89 41.6
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 1.3e-07 61.2 96 36.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-07 60.1 80 45.0


User provided reference genes

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