Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 4.6e-68 261.5 177 100.0
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 4.3e-50 201.8 170 85.9
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 6.8e-48 194.5 177 66.7
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.2e-47 193.7 179 64.8
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 7.3e-42 174.5 174 58.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 4.0e-40 168.7 172 57.0
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.2e-39 167.2 177 54.2
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.4e-39 165.6 172 56.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 5.8e-39 164.9 172 56.4
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.3e-38 163.7 172 55.8
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 7.1e-37 157.9 171 53.2
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 7.1e-37 157.9 177 53.1
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 3.0e-35 152.5 170 54.1
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.9e-35 152.1 166 53.0
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 5.1e-35 151.8 169 53.8
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 5.1e-35 151.8 169 54.4
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-34 150.6 172 57.0
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 4.3e-34 148.7 166 56.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 2.1e-33 146.4 163 57.1
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 6.2e-33 144.8 171 50.9
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 6.2e-33 144.8 160 51.9
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.1e-32 144.1 172 61.0
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-32 144.1 152 73.0
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-32 144.1 152 73.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.4e-32 142.9 171 48.5
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.1e-32 142.5 173 50.3
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 4.0e-32 142.1 176 48.9
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-31 140.6 172 49.4
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.5e-31 140.2 180 61.1
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.6e-31 139.4 171 58.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.5e-31 138.7 180 60.6
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 5.8e-31 138.3 180 61.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 7.6e-31 137.9 173 63.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.7e-30 136.7 158 64.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 4.9e-30 135.2 162 46.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.4e-30 134.8 171 47.4
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.4e-29 132.9 153 64.1
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.2e-29 132.5 165 45.5
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.2e-29 132.5 172 47.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 4.2e-29 132.1 169 46.7
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 4.2e-29 132.1 173 47.4
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.4e-29 131.7 169 59.2
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 7.1e-29 131.3 170 48.2
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 9.3e-29 131.0 169 46.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.2e-28 130.6 173 44.5
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.6e-28 130.2 172 47.1
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.6e-28 130.2 174 49.4
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.1e-28 129.8 180 60.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.1e-28 129.8 154 46.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.7e-28 129.4 156 59.6
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 3.5e-28 129.0 171 45.6
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.5e-28 129.0 173 45.1
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.5e-28 129.0 174 47.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.5e-28 129.0 174 47.7
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 3.5e-28 129.0 169 45.6
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.5e-28 129.0 169 47.9
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.6e-28 128.6 184 46.2
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 6.0e-28 128.3 169 46.2
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 6.0e-28 128.3 154 46.1
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.0e-27 127.5 179 46.4
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.8e-27 126.7 174 47.1
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.3e-27 126.3 173 44.5
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 3.0e-27 125.9 179 45.3
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.9e-27 125.6 159 45.9
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.9e-27 125.6 167 60.5
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 3.9e-27 125.6 168 61.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 6.7e-27 124.8 168 44.6
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.7e-27 124.4 174 43.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.5e-26 123.6 176 44.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.5e-26 123.6 172 44.8
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.5e-26 123.6 167 44.3
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.9e-26 123.2 163 46.6
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-26 122.9 174 43.7
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.5e-26 122.9 174 43.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 4.3e-26 122.1 172 44.2
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.6e-26 120.9 175 44.0
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.8e-25 119.4 174 51.1
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 3.7e-25 119.0 171 42.7
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.7e-25 119.0 173 49.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.2e-25 118.2 178 42.1
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.4e-24 117.1 173 49.1
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 2.4e-24 116.3 173 49.7
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 5.3e-24 115.2 171 42.1
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 5.3e-24 115.2 171 42.1
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 9.0e-24 114.4 177 54.2
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.8e-23 111.7 185 55.7
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 7.6e-23 111.3 168 43.5
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.0e-22 110.9 169 40.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.3e-22 110.5 225 37.3
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.8e-22 109.0 169 55.6
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 6.5e-22 108.2 172 44.2
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.1e-21 107.5 170 37.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.4e-21 107.1 178 57.3
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-21 106.7 170 45.3
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.9e-21 106.7 178 57.9
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.2e-21 105.9 171 45.0
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.5e-21 105.1 173 49.1
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 9.3e-21 104.4 169 53.8
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 9.3e-21 104.4 176 55.1
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 2.7e-20 102.8 163 42.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 2.7e-20 102.8 150 55.3
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 6.0e-20 101.7 176 55.1
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.0e-19 100.9 169 41.4
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-19 100.5 171 43.9
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.3e-19 99.8 151 46.4
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 3.0e-19 99.4 124 59.7
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 6.7e-19 98.2 172 48.3
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.8e-17 92.8 169 55.6
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.8e-17 92.0 235 31.9
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.8e-16 90.1 200 34.5
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 3.1e-16 89.4 106 71.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 6.9e-16 88.2 187 35.3
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 9.0e-16 87.8 85 54.1
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 9.0e-16 87.8 152 33.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.0e-15 86.7 173 45.1
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.6e-15 86.3 178 50.6
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 4.5e-15 85.5 83 53.0
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 5.8e-15 85.1 182 50.5
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.0e-14 84.3 71 64.8
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.0e-14 84.3 71 64.8
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 8.4e-14 81.3 85 51.8
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.4e-13 80.5 177 41.8
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.5e-13 79.7 103 48.5
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-13 79.7 169 39.6
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 9.3e-13 77.8 103 60.2
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.2e-12 77.4 170 52.4
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.6e-12 77.0 103 72.8
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 3.5e-12 75.9 121 62.8
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 4.6e-12 75.5 180 35.0
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.8e-11 73.6 157 51.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.5e-10 70.5 156 52.6
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 4.3e-10 68.9 125 53.6
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 5.7e-10 68.6 104 41.3
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.4e-10 68.2 61 50.8
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.4e-10 68.2 57 64.9
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 9.7e-10 67.8 86 52.3
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 4.1e-08 62.4 178 39.9
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 6.9e-08 61.6 47 63.8
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.2e-07 60.8 155 38.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-07 60.8 155 38.1
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 1.5e-07 60.5 50 68.0
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.5e-07 60.5 91 40.7
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 2.6e-07 59.7 41 58.5


User provided reference genes

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