Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 6.1e-132 474.2 243 100.0
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 9.9e-114 413.7 239 88.7
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.7e-113 411.8 239 87.9
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 2.8e-108 395.6 223 90.6
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.9e-96 356.3 239 74.9
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.9e-96 356.3 239 74.9
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 7.8e-95 350.9 246 73.6
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.1e-94 348.2 244 73.4
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 5.1e-94 348.2 244 73.0
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 5.1e-94 348.2 244 73.0
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 1.6e-92 343.2 245 71.0
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 4.8e-92 341.7 216 79.2
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 2.2e-89 332.8 234 73.1
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.1e-88 330.5 237 69.6
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.6e-87 326.6 242 69.4
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.3e-86 323.6 255 64.7
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.5e-85 320.1 234 66.2
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.3e-85 318.5 230 68.7
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 4.3e-85 318.5 237 68.8
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 1.3e-84 317.0 229 68.1
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.6e-84 316.6 213 68.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 2.1e-84 316.2 235 64.3
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 3.7e-84 315.5 232 67.2
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 3.7e-84 315.5 236 65.7
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 4.8e-84 315.1 234 66.7
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 6.2e-84 314.7 236 65.7
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 6.2e-84 314.7 236 65.7
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.4e-83 313.5 236 67.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.4e-83 312.8 235 67.7
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.1e-83 312.4 237 66.7
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 3.1e-83 312.4 231 68.0
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.0e-83 312.0 231 68.0
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 9.0e-83 310.8 233 66.5
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 9.0e-83 310.8 237 65.4
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.2e-82 310.5 239 66.1
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 1.5e-82 310.1 232 67.2
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 2.0e-82 309.7 225 69.3
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 4.5e-82 308.5 233 68.7
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 4.5e-82 308.5 239 64.4
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 4.5e-82 308.5 235 63.0
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 5.8e-82 308.1 228 66.7
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 7.6e-82 307.8 235 66.0
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 9.9e-82 307.4 239 63.2
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 1.3e-81 307.0 229 67.7
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.7e-81 306.6 231 64.1
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.7e-81 306.6 235 63.0
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.2e-81 306.2 232 65.5
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.9e-81 305.8 231 64.1
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.9e-81 305.8 226 67.3
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 2.9e-81 305.8 235 65.5
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.8e-81 305.4 225 67.1
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.9e-81 305.1 242 65.3
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 4.9e-81 305.1 239 62.8
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 8.4e-81 304.3 235 63.8
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.1e-80 303.9 236 64.4
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.4e-80 303.5 235 62.6
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.4e-80 303.5 235 62.6
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.9e-80 303.1 240 63.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 4.2e-80 302.0 236 63.6
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 5.5e-80 301.6 227 63.4
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 5.5e-80 301.6 227 67.0
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 7.1e-80 301.2 235 65.1
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.2e-79 300.4 234 62.0
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.2e-79 300.4 240 60.8
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.2e-79 300.4 231 64.9
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.6e-79 300.1 240 63.3
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 2.1e-79 299.7 235 61.7
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 2.7e-79 299.3 228 64.0
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 3.5e-79 298.9 245 65.3
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.5e-79 298.9 202 73.8
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 4.6e-79 298.5 225 63.1
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 4.6e-79 298.5 225 67.1
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 6.0e-79 298.1 237 60.8
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 6.0e-79 298.1 225 62.7
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 7.9e-79 297.7 237 60.8
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 7.9e-79 297.7 239 64.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 2.3e-78 296.2 231 62.3
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.5e-77 293.5 234 65.0
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.5e-77 293.5 260 61.2
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 4.3e-77 292.0 229 64.2
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 9.6e-77 290.8 204 67.2
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.6e-76 290.0 235 61.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 2.8e-76 289.3 237 60.8
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 2.8e-76 289.3 213 68.1
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 6.2e-76 288.1 221 64.7
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.4e-75 287.0 223 63.2
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 6.9e-75 284.6 221 64.7
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 4.9e-73 278.5 231 61.9
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 6.5e-73 278.1 211 64.9
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 2.5e-72 276.2 234 62.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.2e-71 273.9 379 42.7
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.6e-71 273.5 233 59.7
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.3e-70 270.4 223 62.8
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 3.3e-69 265.8 231 61.5
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.2e-68 263.1 199 67.3
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.1e-64 250.8 236 55.9
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.9e-56 223.4 185 62.2
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 5.5e-56 221.9 189 61.9
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.4e-54 217.2 212 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 3.9e-54 215.7 228 50.9
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.1e-53 214.2 199 55.8
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.7e-52 210.3 138 74.6
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.1e-51 207.6 204 53.4
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 2.2e-41 173.3 134 60.4
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 3.6e-39 166.0 218 42.2
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 5.5e-32 142.1 98 69.4
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 5.2e-30 135.6 141 52.5
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.4e-27 126.7 100 60.0
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.5e-24 116.7 78 73.1
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.6e-18 97.4 228 35.1
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 3.3e-08 63.2 201 29.4
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 3.1e-06 56.6 196 27.6
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 8.9e-06 55.1 153 30.1
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 8.9e-06 55.1 206 24.8


User provided reference genes

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