Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 2061.6 1130 100.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1931.0 1130 89.3
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1911.7 1130 88.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1883.2 1068 96.2
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1794.2 1131 81.8
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1784.2 1071 84.2
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1767.3 1140 84.6
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1767.3 1140 84.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1754.6 1131 82.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1733.0 1130 82.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1712.2 1032 84.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1642.9 1130 76.0
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1629.4 1132 74.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1132 74.1
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1131 77.7
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1624.0 1130 75.1
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1129 74.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1132 74.9
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1130 75.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1618.2 1067 76.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1616.7 1134 74.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1613.6 1135 73.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1613.6 1129 74.7
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1137 75.0
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1129 73.7
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1612.8 1130 74.8
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1609.3 1067 76.2
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1606.3 1130 73.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1604.0 1129 73.1
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1603.6 1134 76.5
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1602.8 1129 73.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1599.7 1129 72.9
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1597.8 1067 76.3
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1596.6 1129 72.5
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1593.2 1129 72.6
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1592.8 1129 72.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1591.6 1129 72.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1587.0 1134 72.9
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1583.2 1139 72.0
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1582.8 1131 72.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1066 75.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1133 72.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1568.1 1068 74.3
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1067 74.9
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1068 74.3
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1130 72.0
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1129 72.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1067 74.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1129 71.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1560.0 1129 72.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1558.1 1118 71.7
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1067 73.9
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1546.6 1066 73.7
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1546.2 1070 73.6
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1543.5 1135 72.2
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1539.2 1131 71.5
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1531.2 1129 70.5
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1530.4 1130 69.2
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1528.1 1100 72.6
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 1129 70.1
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 1068 72.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1518.4 1134 71.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1517.7 1136 69.6
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 1132 71.0
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1511.9 1071 72.5
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1511.1 1128 69.9
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1510.0 1067 72.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1506.5 1134 68.3
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1506.1 1070 71.3
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1502.3 1064 71.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1502.3 1069 71.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1502.3 1131 68.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1497.3 1068 71.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1495.7 1137 67.5
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1493.8 1067 70.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1493.4 891 85.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1491.5 1069 70.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1488.8 1030 74.0
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1486.9 1129 68.6
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1486.1 1071 70.3
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1132 69.6
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1481.5 1139 67.2
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1478.0 1134 67.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1472.6 1134 66.8
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1471.4 1134 67.0
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1471.4 1134 67.2
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1044 71.7
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1071 69.5
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1134 66.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1470.3 1134 66.9
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1469.9 1136 67.4
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 1134 67.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 1136 67.3
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1466.4 1071 69.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1463.7 1071 69.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1440.6 921 78.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1431.4 1008 74.2
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1385.5 924 76.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1370.1 1071 66.7
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1352.8 1041 67.2
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1350.9 1071 64.0
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1339.3 1150 62.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1288.9 1067 61.7
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1279.2 1066 61.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1260.7 883 72.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1129.0 822 73.5
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1115.5 882 64.5
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.0e-309 1067.0 1070 51.9
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 3.4e-302 1042.0 733 74.2
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.8e-298 1029.6 1071 49.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.5e-292 1009.2 669 76.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 4.4e-289 998.4 763 66.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.0e-285 987.3 1069 50.2
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.7e-280 969.9 1072 46.2
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.9e-237 825.9 881 52.4
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 2.5e-220 770.0 606 67.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.7e-213 747.3 1091 42.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 9.6e-204 714.9 615 60.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-158 565.1 366 76.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.1e-133 480.7 421 64.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.9e-122 444.9 358 64.0
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 8.1e-118 429.5 354 61.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 9.3e-98 362.8 1188 29.0
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 7.4e-95 353.2 1139 29.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.2e-84 319.3 314 56.1
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.3e-80 305.1 249 64.7
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.9e-80 304.3 364 47.5
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.1e-72 277.3 338 53.3
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.8e-67 261.2 326 46.0
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 2.2e-54 218.8 322 44.4
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-31 143.3 100 74.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 4.9e-30 137.9 110 70.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.5e-28 131.7 643 21.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-25 123.2 69 79.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-25 122.1 68 79.4
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-24 119.0 86 73.3
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.0e-23 115.9 86 72.1
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.2e-20 106.7 145 49.0
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 7.3e-10 70.9 79 51.9


User provided reference genes

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