Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.6e-250 867.5 444 100.0
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.9e-236 820.8 444 95.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 8.4e-228 793.5 444 93.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.1e-224 783.1 444 92.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-213 746.1 445 87.2
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-213 746.1 445 87.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.0e-213 745.7 440 88.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.2e-211 738.0 443 86.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.6e-210 734.6 442 85.7
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.1e-206 721.8 445 86.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.1e-206 721.8 442 84.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.2e-205 719.9 442 83.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.4e-205 718.4 441 83.9
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.5e-205 718.0 441 83.9
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 5.8e-205 717.6 441 83.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 5.8e-205 717.6 442 85.5
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 9.9e-205 716.8 445 83.1
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.9e-203 712.6 443 83.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.2e-203 711.8 445 82.7
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.2e-203 711.8 443 83.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.2e-203 711.4 443 82.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 4.2e-203 711.4 441 85.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 7.1e-203 710.7 442 83.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.6e-202 708.0 442 81.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 6.0e-202 707.6 448 81.7
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.0e-201 706.8 442 82.6
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.3e-201 705.7 446 81.8
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.1e-201 704.5 443 81.5
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.9e-200 702.6 443 81.9
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.9e-200 702.6 442 81.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.3e-200 701.4 443 81.5
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.3e-199 699.9 443 81.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 3.7e-199 698.4 449 81.1
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.7e-199 698.4 450 81.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.2e-199 697.6 445 81.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.8e-198 696.0 442 81.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.8e-198 696.0 446 80.9
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 80.8
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 9.0e-198 693.7 443 80.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.2e-197 693.3 443 80.6
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.0e-197 692.6 447 80.5
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 81.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.6e-197 692.2 443 81.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.5e-197 691.4 441 80.7
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.3e-196 689.9 443 81.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.7e-196 689.5 442 81.2
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.7e-196 689.5 445 80.9
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.2e-196 689.1 443 80.8
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.9e-196 688.7 445 80.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.9e-196 688.0 443 80.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-195 686.4 443 80.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-195 686.0 443 80.8
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.9e-195 686.0 445 79.6
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 2.5e-195 685.6 443 80.1
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 4.2e-195 684.9 447 81.4
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 5.5e-195 684.5 443 80.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 5.5e-195 684.5 420 84.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.7e-194 682.2 444 80.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.5e-194 681.8 444 79.7
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 4.6e-194 681.4 442 81.2
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 6.0e-194 681.0 443 80.4
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.0e-193 680.2 442 80.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.3e-193 679.9 444 79.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-193 679.9 441 80.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.3e-193 679.9 442 79.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.9e-193 678.3 445 78.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.9e-193 678.3 443 80.1
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.5e-192 676.4 445 79.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-192 674.9 447 79.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-192 674.9 444 78.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 4.3e-192 674.9 444 78.4
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-191 673.3 442 79.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.7e-191 671.8 380 87.4
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.7e-191 671.8 444 79.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 6.3e-191 671.0 396 84.3
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 6.3e-191 671.0 443 79.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.2e-191 670.6 380 87.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.1e-190 670.2 446 80.3
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.4e-190 669.8 443 79.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.8e-190 669.5 442 78.7
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.1e-190 668.7 440 79.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 9.0e-190 667.2 445 77.8
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 448 77.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 5.9e-189 664.5 445 77.8
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.3e-188 663.3 447 78.1
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 444 77.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 5.0e-188 661.4 443 77.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 5.0e-188 661.4 445 77.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.1e-187 660.2 401 83.5
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.5e-187 659.1 432 79.2
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.2e-187 658.7 446 77.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 4.2e-187 658.3 445 76.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.5e-187 657.9 446 77.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.6e-186 656.4 450 76.9
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.6e-186 654.8 444 76.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.4e-185 653.3 444 76.8
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.8e-185 652.9 444 77.0
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 2.3e-185 652.5 444 76.6
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.3e-185 652.5 442 77.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-184 649.4 446 76.7
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-184 649.4 446 76.7
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-184 648.3 401 82.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-184 648.3 401 82.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 7.4e-184 647.5 449 77.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.7e-184 647.1 437 76.7
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.7e-183 645.2 443 77.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-183 645.2 385 83.6
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-182 643.3 390 84.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.4e-182 642.5 440 75.9
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.1e-182 642.1 416 80.3
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.5e-181 638.3 440 75.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 5.9e-181 637.9 437 76.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-179 633.6 395 80.8
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.2e-179 632.1 378 83.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.2e-179 631.7 430 76.3
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.1e-178 627.9 484 71.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 7.4e-176 620.9 459 71.0
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.8e-172 608.6 442 73.8
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.2e-170 603.6 446 73.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.9e-169 598.6 383 82.0
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.9e-163 579.7 445 71.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.2e-163 578.9 369 81.6
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 5.7e-160 568.2 366 83.1
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 2.2e-159 566.2 394 76.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.8e-153 546.6 404 67.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 372 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 4.8e-151 538.5 397 67.5
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.2e-149 533.9 305 88.5
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.3e-148 530.4 365 69.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.8e-145 520.0 378 68.3
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.8e-145 518.1 377 68.7
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-144 516.2 381 66.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.4e-144 515.8 413 63.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.7e-144 515.0 377 67.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.5e-144 514.6 377 67.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.2e-143 513.1 396 65.9
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.1e-142 509.2 361 71.7
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 5.4e-142 508.4 364 67.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.1e-138 495.0 401 64.1
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.4e-135 485.0 394 59.9
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.1e-131 474.2 317 77.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.9e-131 473.4 385 60.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.6e-128 463.0 359 63.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 8.1e-114 414.8 440 53.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 7.1e-102 375.2 366 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.1e-94 348.6 302 61.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-81 308.1 226 70.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-69 266.5 187 77.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.0e-68 263.5 328 44.8
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.1e-61 240.7 220 57.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-60 236.9 151 82.1
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 4.4e-59 233.0 123 88.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 9.1e-57 225.3 160 69.4
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.5e-40 169.9 119 71.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-39 168.3 156 54.5
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.0e-35 154.5 158 57.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 3.5e-32 143.7 80 90.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.3e-31 141.7 81 87.7
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.8e-28 131.3 134 50.7
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 3.6e-21 107.1 75 64.0
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 4.9e-18 96.7 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.9e-14 84.7 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.7e-07 61.6 35 82.9


User provided reference genes

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