Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 7.5e-79 297.0 136 100.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.5e-71 272.7 136 92.6
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 8.3e-70 266.9 139 90.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 2.3e-67 258.8 139 87.1
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.1e-60 235.7 133 79.7
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.5e-60 235.0 134 78.4
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.6e-60 234.6 133 78.2
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 4.6e-60 234.6 133 79.7
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.0e-60 234.2 134 76.9
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 7.8e-60 233.8 133 77.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.0e-59 233.4 133 78.9
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 2.3e-59 232.3 133 77.4
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 6.6e-59 230.7 133 76.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 8.7e-59 230.3 133 76.7
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.9e-58 229.2 149 69.8
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 5.6e-58 227.6 145 71.0
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 133 76.7
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 7.3e-58 227.3 133 76.7
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 9.6e-58 226.9 144 72.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 9.6e-58 226.9 132 77.3
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 9.6e-58 226.9 144 70.8
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.6e-58 226.9 133 75.2
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-57 226.5 133 75.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.6e-57 226.1 147 71.4
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 4.7e-57 224.6 128 76.6
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 8.1e-57 223.8 136 72.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.1e-56 223.4 142 70.4
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.8e-56 222.6 136 72.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.4e-56 222.2 150 68.0
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.1e-56 221.9 133 73.7
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 3.1e-56 221.9 133 74.4
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.0e-56 221.5 151 67.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 5.2e-56 221.1 145 69.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 5.2e-56 221.1 134 78.4
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.0e-55 219.2 133 73.7
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 2.0e-55 219.2 134 75.4
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 2.6e-55 218.8 142 69.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 2.6e-55 218.8 117 81.2
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 3.4e-55 218.4 120 79.2
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 5.8e-55 217.6 133 72.2
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 9.9e-55 216.9 133 72.2
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 9.9e-55 216.9 133 71.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.3e-54 216.5 142 69.7
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.3e-54 216.5 159 62.9
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.7e-54 216.1 133 72.9
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-54 216.1 133 71.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.2e-54 215.7 120 76.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.2e-54 215.7 133 73.7
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 71.4
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 71.4
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 73.7
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 3.8e-54 214.9 146 66.4
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.9e-54 214.5 132 68.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-54 214.5 134 70.9
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.9e-54 214.5 134 70.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 4.9e-54 214.5 136 69.1
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 4.9e-54 214.5 147 66.7
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.9e-54 214.5 145 67.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.4e-54 214.2 134 70.9
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.4e-54 214.2 133 70.7
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 8.4e-54 213.8 120 75.8
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 3.2e-53 211.8 152 62.5
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 7.1e-53 210.7 150 64.0
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.2e-52 209.9 133 71.4
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-52 209.5 133 68.4
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-52 209.5 133 68.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 2.7e-52 208.8 133 67.7
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 4.6e-52 208.0 133 68.4
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 4.6e-52 208.0 133 68.4
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 4.6e-52 208.0 123 70.7
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 7.8e-52 207.2 133 68.4
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 7.8e-52 207.2 120 71.7
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.0e-51 206.8 159 57.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 3.0e-51 205.3 117 75.2
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 3.9e-51 204.9 133 67.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.9e-51 204.9 132 72.0
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 5.1e-51 204.5 133 67.7
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 5.1e-51 204.5 144 67.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.6e-51 204.1 132 72.0
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 8.7e-51 203.8 133 66.9
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 8.7e-51 203.8 133 66.9
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 8.7e-51 203.8 133 66.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.1e-50 203.4 122 69.7
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.1e-50 203.4 122 69.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.1e-50 203.4 117 76.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.5e-50 203.0 133 70.7
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.5e-50 203.0 150 62.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.9e-50 202.6 150 62.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.9e-50 202.6 120 71.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 4.3e-50 201.4 120 70.8
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 4.3e-50 201.4 134 67.2
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.3e-50 201.4 134 67.9
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.3e-50 201.4 134 67.9
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 5.6e-50 201.1 146 62.3
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 7.3e-50 200.7 120 73.3
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 7.3e-50 200.7 120 73.3
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.6e-49 199.5 133 66.2
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.8e-49 198.0 145 62.8
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.8e-48 196.1 154 58.4
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.1e-48 195.3 132 67.4
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.9e-48 194.1 139 63.3
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.9e-48 194.1 126 70.6
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.2e-47 193.4 128 68.8
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.0e-47 192.6 127 70.1
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.9e-44 180.6 113 69.0
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.9e-44 180.6 113 69.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.3e-43 179.9 124 65.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 8.7e-43 177.2 140 56.4
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.0e-39 166.0 123 61.0
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 4.9e-38 161.4 116 58.6
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 3.2e-37 158.7 158 49.4
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 8.7e-35 150.6 106 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-34 150.2 116 54.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.5e-34 149.8 170 43.5
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 4.3e-34 148.3 116 51.7
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.6e-33 146.4 123 53.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.0e-31 139.4 87 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.6e-31 137.5 135 47.4
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.0e-27 127.1 69 75.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 9.7e-26 120.6 56 87.5
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 3.1e-24 115.5 55 80.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.9e-16 87.8 115 43.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 2.9e-14 82.4 102 44.1
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.8e-14 82.0 81 53.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.5e-14 81.3 49 67.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-13 80.1 66 56.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.5e-13 79.3 80 52.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 5.5e-13 78.2 80 51.2
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.6e-12 75.5 62 54.8
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 2.3e-11 72.8 40 72.5
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-10 70.1 50 60.0
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.2e-09 66.2 75 46.7
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.2e-09 66.2 46 54.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.4e-08 63.5 102 35.3
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.4e-08 63.5 60 46.7
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-08 63.2 45 53.3
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-08 63.2 45 53.3
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-08 62.4 94 40.4
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.5e-07 58.5 46 50.0
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 6.5e-06 54.7 30 76.7
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.5e-06 54.7 46 50.0


User provided reference genes

Program Settings