Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 0.0e+00 1203.7 647 100.0
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 0.0e+00 1077.0 650 86.9
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.0e-286 988.8 631 82.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 5.0e-282 974.2 631 81.3
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 5.2e-271 937.6 637 76.3
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 9.9e-270 933.3 648 75.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.1e-264 915.6 641 76.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.8e-256 888.6 642 72.4
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.9e-249 865.9 679 68.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.3e-249 864.8 646 71.1
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.4e-247 859.0 646 71.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.4e-247 859.0 641 71.8
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.4e-222 775.4 633 67.8
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.7e-216 756.5 644 61.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 6.3e-216 754.6 645 61.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 6.9e-215 751.1 650 60.8
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.8e-210 736.5 654 59.5
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.4e-207 726.9 642 59.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.6e-206 722.6 657 59.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.4e-206 722.2 642 59.0
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.0e-205 720.7 636 60.2
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.3e-205 720.3 641 59.3
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 5.0e-205 718.4 642 60.4
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 6.5e-205 718.0 662 58.8
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 8.5e-205 717.6 644 60.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.4e-204 714.1 647 58.4
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-203 713.4 639 58.5
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.1e-203 713.0 639 58.7
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.3e-201 705.7 637 58.1
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.0e-198 696.4 674 56.7
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 4.5e-198 695.3 640 58.0
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 7.7e-198 694.5 644 56.2
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.9e-196 689.9 643 57.2
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 4.2e-196 688.7 645 56.9
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 4.7e-195 685.3 647 57.5
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 8.0e-195 684.5 650 55.5
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 7.0e-191 671.4 650 54.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.9e-189 666.0 632 55.9
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.9e-189 666.0 608 58.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.5e-188 663.7 637 56.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 5.5e-188 661.8 646 54.6
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.2e-187 660.6 643 55.2
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 3.6e-187 659.1 629 55.2
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 4.7e-187 658.7 634 56.0
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 4.7e-187 658.7 634 56.0
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.4e-186 657.1 633 55.0
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.5e-185 653.7 632 55.2
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.0e-185 653.3 650 53.2
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 3.4e-185 652.5 635 54.6
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 7.5e-185 651.4 633 55.6
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.7e-184 649.0 636 54.1
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.1e-183 647.5 634 54.3
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.1e-183 647.5 579 59.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-183 646.4 642 58.1
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.1e-183 645.6 645 53.8
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 7.0e-183 644.8 638 53.6
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 5.9e-182 641.7 656 51.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 7.7e-182 641.3 636 53.8
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.3e-181 640.6 645 53.6
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 8.6e-181 637.9 570 59.6
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 3.6e-179 632.5 637 53.1
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.3e-178 629.8 646 52.3
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 3.4e-177 625.9 644 51.7
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 7.5e-177 624.8 643 52.4
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.3e-176 624.0 690 50.1
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.2e-176 623.2 571 57.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.9e-176 622.1 632 53.5
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.4e-175 620.5 652 52.8
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 8.0e-171 604.7 592 59.1
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.4e-170 604.0 647 50.5
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 6.8e-170 601.7 552 58.0
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.1e-167 594.3 543 56.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.6e-166 590.5 615 52.7
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.7e-166 589.7 645 51.3
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.7e-165 587.0 578 55.7
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.9e-164 583.6 532 57.3
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 7.3e-164 581.6 642 49.4
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 7.3e-164 581.6 656 48.5
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 9.5e-164 581.3 619 51.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 4.7e-163 578.9 644 50.9
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.0e-162 575.9 527 58.8
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 8.9e-162 574.7 527 58.6
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.4e-161 572.8 640 49.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 8.6e-157 558.1 680 47.5
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 5.6e-156 555.4 530 57.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 8.3e-152 541.6 641 46.6
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.4e-151 540.0 468 60.5
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.7e-150 536.6 616 52.4
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 6.0e-150 535.4 641 47.7
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 7.8e-150 535.0 635 45.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.7e-149 533.9 462 60.6
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 5.1e-149 532.3 632 47.9
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 3.3e-148 529.6 573 51.7
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 4.0e-146 522.7 639 46.2
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.4e-143 514.2 469 57.6
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.7e-141 507.3 567 49.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.5e-132 476.9 679 43.2
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.7e-125 451.8 391 58.3
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.1e-114 416.8 401 61.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.7e-112 411.0 469 47.1
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 4.5e-105 386.3 392 52.6
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.0e-84 317.8 648 31.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.0e-80 305.4 668 31.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-75 288.5 647 32.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 2.0e-73 281.2 528 37.3
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 2.0e-73 281.2 528 37.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 2.7e-73 280.8 634 30.6
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.8e-72 276.9 375 44.3
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.2e-70 271.9 524 33.2
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 1.0e-61 242.3 367 42.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-55 222.2 272 44.5
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 2.0e-52 211.5 270 44.8
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-51 208.4 270 44.4
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.4e-43 179.9 195 50.3
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 2.5e-39 167.9 421 28.3
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.4e-36 157.1 130 63.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 3.2e-34 151.0 130 59.2
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.6e-33 147.1 222 42.8
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.6e-31 140.2 161 46.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 7.3e-31 139.8 168 46.4
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.2e-30 136.7 142 49.3
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-29 136.0 412 30.8
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 5.2e-29 133.7 180 43.3
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.9e-27 127.9 144 46.5
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.9e-27 127.1 384 31.2
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.9e-26 125.2 328 29.3
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-25 122.5 166 38.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 9.6e-23 112.8 260 36.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 2.4e-21 108.2 150 42.0
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.9e-18 98.6 64 75.0
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 5.4e-18 97.1 116 43.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 3.9e-16 90.9 59 72.9
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.3e-15 86.7 82 56.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 8.1e-14 83.2 134 35.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.8e-13 82.0 117 39.3
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 9.0e-13 79.7 87 49.4
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 4.5e-12 77.4 128 38.3
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 3.2e-10 71.2 74 51.4
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 5.5e-10 70.5 41 78.0
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.3e-10 69.7 65 52.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 2.1e-09 68.6 68 47.1
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 1.6e-06 58.9 95 42.1
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 3.7e-06 57.8 91 39.6
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 6.2e-06 57.0 44 59.1


User provided reference genes

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