Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 0.0e+00 1399.0 709 100.0
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 0.0e+00 1165.2 711 84.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 0.0e+00 1160.2 709 83.9
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 0.0e+00 1138.6 699 83.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.1e-303 1046.2 709 76.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.8e-302 1041.6 718 75.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 3.7e-302 1041.2 718 74.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 4.1e-301 1037.7 704 75.4
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.9e-299 1031.6 718 74.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 8.5e-299 1030.0 716 73.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-298 1028.5 718 74.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.4e-296 1022.7 732 73.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.3e-296 1021.9 718 73.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-293 1012.7 718 72.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 5.9e-292 1007.3 718 73.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.8e-291 1004.6 718 72.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.6e-287 991.9 697 73.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 4.1e-277 958.0 722 69.5
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 9.1e-277 956.8 719 70.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.6e-273 944.9 719 68.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 6.3e-270 934.1 707 69.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.8e-267 924.9 705 68.1
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.5e-266 922.2 703 67.4
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 4.2e-266 921.4 705 67.8
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 6.8e-264 914.1 704 67.8
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.7e-262 909.4 704 66.1
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-262 909.1 704 66.9
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.1e-261 906.7 707 67.3
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.4e-261 905.6 709 66.9
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.4e-261 904.4 704 66.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 5.4e-261 904.4 720 64.3
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.6e-260 902.9 706 66.4
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 7.8e-260 900.6 710 65.9
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.0e-259 900.2 704 66.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.3e-259 899.0 719 65.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.3e-259 899.0 702 67.0
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 3.8e-259 898.3 705 65.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 8.6e-259 897.1 708 66.2
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.5e-258 895.6 702 67.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.6e-258 894.4 702 67.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-257 892.5 700 65.4
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-256 890.2 709 65.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.4e-256 889.8 709 65.2
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.5e-255 886.3 709 65.0
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.6e-255 885.6 702 66.4
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 2.6e-255 885.6 710 64.6
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 9.8e-255 883.6 704 65.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.9e-253 879.4 736 63.2
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 9.2e-253 877.1 716 64.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.0e-252 875.9 730 64.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.0e-251 873.6 681 67.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-251 872.5 702 64.2
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.5e-250 869.8 707 64.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 5.6e-250 867.8 678 69.0
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.6e-249 866.3 712 63.1
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.4e-248 863.2 711 64.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.8e-248 860.9 718 61.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.4e-245 853.2 709 63.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.1e-245 851.7 702 62.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.4e-245 851.3 752 60.4
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 9.2e-245 850.5 702 62.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 6.0e-244 847.8 707 61.2
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 6.0e-244 847.8 735 61.0
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 3.9e-243 845.1 702 62.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 6.6e-243 844.3 718 61.8
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 8.6e-243 844.0 714 61.6
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.9e-242 842.8 788 57.5
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.5e-242 842.4 716 60.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.8e-241 839.0 720 61.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.8e-241 839.0 709 61.4
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.2e-239 833.6 700 63.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.5e-239 833.2 713 60.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.5e-239 833.2 707 62.4
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.4e-239 831.6 699 62.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.3e-238 830.1 695 61.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 3.2e-237 825.5 700 61.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.0e-235 820.5 697 61.7
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-235 819.7 704 60.4
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.0e-235 818.9 704 60.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.1e-234 817.0 681 62.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.9e-234 816.2 702 59.5
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 9.5e-234 813.9 699 60.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.1e-233 812.8 728 59.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 6.2e-233 811.2 702 61.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 6.2e-233 811.2 648 66.2
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.6e-231 805.8 733 58.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.4e-231 805.4 706 60.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.2e-230 802.7 653 65.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.9e-230 801.6 698 60.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 8.4e-230 800.8 702 60.3
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.2e-229 798.9 682 60.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.4e-229 798.1 706 59.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 7.1e-229 797.7 712 59.8
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 9.2e-229 797.3 706 59.9
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-228 797.0 706 59.8
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.1e-228 796.2 714 59.2
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.3e-226 788.9 715 57.5
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 4.3e-226 788.5 720 58.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 7.3e-226 787.7 722 58.2
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.1e-224 782.3 712 57.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-222 775.4 717 58.7
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 6.4e-222 774.6 651 62.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.2e-221 772.3 682 59.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.6e-218 761.5 709 57.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 7.3e-218 761.1 711 58.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 7.3e-218 761.1 706 57.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 5.3e-216 755.0 702 57.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-215 753.4 715 57.9
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.2e-213 745.7 710 54.5
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.1e-212 743.0 707 56.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.1e-212 743.0 705 56.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 9.0e-208 727.6 706 57.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.5e-207 726.9 710 53.9
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.2e-205 719.2 549 67.9
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 6.9e-200 701.4 693 55.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.4e-197 693.7 613 61.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-189 666.8 550 63.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.6e-188 662.5 645 56.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.4e-187 660.6 578 60.2
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 8.8e-187 657.9 699 50.6
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.2e-185 653.3 608 58.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.7e-185 652.5 616 58.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.3e-185 651.7 704 52.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 3.1e-184 649.4 707 52.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-180 636.7 564 59.9
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.3e-178 629.4 707 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 9.1e-176 621.3 656 52.6
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.5e-170 604.0 495 62.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.8e-153 546.6 720 43.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 8.6e-150 535.0 681 46.8
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.2e-130 471.5 887 37.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-130 471.5 337 69.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.1e-128 463.0 578 46.9
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.1e-118 429.5 446 53.6
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-102 376.7 263 69.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-97 361.3 260 68.8
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 3.4e-74 283.9 367 47.1
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.0e-69 268.1 498 33.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.4e-59 234.6 325 43.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 9.4e-56 222.6 548 32.8
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.3e-46 191.4 323 43.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-44 185.3 185 53.5
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.3e-44 183.0 122 70.5
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 7.0e-43 179.9 178 56.7
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-42 178.3 281 38.8
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.1e-39 168.3 137 65.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.5e-37 162.2 122 67.2
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 9.5e-32 142.9 82 86.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 5.9e-26 123.6 185 40.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-24 119.4 305 30.5
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.7e-20 105.5 102 51.0
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-20 105.5 120 46.7
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-18 99.0 327 28.4
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.0e-18 97.1 128 44.5
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.0e-13 82.0 88 53.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.9e-12 78.2 51 70.6
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 8.3e-12 76.6 57 66.7
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-10 72.4 51 68.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-10 72.0 52 63.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-10 72.0 52 63.5
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-08 65.9 37 83.8
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.6e-07 61.2 63 46.0


User provided reference genes

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