Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.8e-87 325.9 166 100.0
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 8.6e-77 290.4 165 89.7
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 2.1e-75 285.8 166 84.9
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 3.6e-75 285.0 166 84.3
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.9e-72 275.4 166 84.3
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 6.4e-72 274.2 160 84.4
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 6.4e-72 274.2 166 83.1
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 7.0e-71 270.8 160 83.1
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 3.5e-70 268.5 162 81.5
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 3.5e-70 268.5 152 90.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.6e-70 268.1 158 84.2
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 7.8e-70 267.3 158 84.2
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 7.8e-70 267.3 158 84.2
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 7.8e-70 267.3 161 82.0
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.3e-69 266.5 162 84.0
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 8.6e-69 263.8 158 82.3
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.1e-68 263.5 158 82.3
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.9e-68 262.7 159 81.1
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 4.3e-68 261.5 161 81.4
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 5.6e-68 261.2 154 82.5
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 7.3e-68 260.8 163 79.1
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 7.3e-68 260.8 160 83.1
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 1.6e-67 259.6 163 77.3
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 2.1e-67 259.2 161 78.3
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 2.8e-67 258.8 156 84.0
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.6e-67 258.5 156 80.8
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 4.7e-67 258.1 156 80.1
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.7e-67 258.1 156 82.1
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 6.2e-67 257.7 158 80.4
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 6.2e-67 257.7 158 80.4
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.4e-66 256.5 162 79.6
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.4e-66 256.5 158 79.7
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 2.3e-66 255.8 161 78.9
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 2.3e-66 255.8 161 78.9
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 2.3e-66 255.8 161 79.5
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 3.1e-66 255.4 162 78.4
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 5.2e-66 254.6 160 78.8
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 8.9e-66 253.8 152 82.2
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.2e-65 253.4 162 77.2
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 2.6e-65 252.3 154 81.8
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 3.4e-65 251.9 161 76.4
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.4e-65 251.5 164 75.6
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 5.8e-65 251.1 150 82.7
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 7.5e-65 250.8 160 76.9
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 9.9e-65 250.4 160 78.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 9.9e-65 250.4 161 75.8
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 9.9e-65 250.4 164 75.6
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 9.9e-65 250.4 164 75.6
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 1.3e-64 250.0 161 75.8
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.2e-64 249.2 159 76.1
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 2.2e-64 249.2 163 77.3
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 6.4e-64 247.7 167 74.9
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 6.4e-64 247.7 160 76.2
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 8.3e-64 247.3 152 80.9
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 8.3e-64 247.3 151 80.8
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 8.3e-64 247.3 151 80.8
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.4e-63 245.7 154 77.9
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 74.8
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.6e-62 243.0 154 76.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.5e-62 241.9 152 80.3
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 4.6e-62 241.5 164 73.2
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.0e-61 240.4 153 79.7
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.3e-61 240.0 159 72.3
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.3e-61 239.2 159 73.0
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 3.0e-61 238.8 154 76.0
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 5.1e-61 238.0 154 77.9
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.1e-61 238.0 154 78.6
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.1e-61 238.0 154 78.6
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 6.6e-61 237.7 154 77.3
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 8.6e-61 237.3 155 74.8
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 4.3e-60 235.0 156 73.1
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 5.6e-60 234.6 154 76.6
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 5.6e-60 234.6 154 77.3
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 7.3e-60 234.2 156 72.4
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 7.3e-60 234.2 154 76.6
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 7.3e-60 234.2 160 72.5
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 9.6e-60 233.8 154 76.6
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 9.6e-60 233.8 154 76.6
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 9.6e-60 233.8 154 76.6
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 9.6e-60 233.8 180 67.2
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 1.2e-59 233.4 154 72.7
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 2.8e-59 232.3 149 75.8
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 3.6e-59 231.9 164 73.8
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 3.6e-59 231.9 154 75.3
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 3.6e-59 231.9 144 78.5
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 4.7e-59 231.5 154 75.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 4.7e-59 231.5 190 65.3
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 8.1e-59 230.7 149 75.2
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.1e-58 230.3 154 75.3
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.1e-58 230.3 153 74.5
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 5.2e-58 228.0 150 73.3
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.0e-57 226.1 150 72.7
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 7.6e-57 224.2 159 70.4
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 2.3e-53 212.6 154 68.2
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 8.7e-53 210.7 181 61.3
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.6e-51 205.3 170 62.9
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.3e-48 196.8 154 60.4
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.6e-43 179.9 91 94.5
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 2.8e-43 179.1 114 78.1
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 2.8e-43 179.1 118 77.1
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.8e-42 176.4 146 58.9
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 4.0e-42 175.3 91 90.1
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 4.9e-40 168.3 151 58.9
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 6.4e-40 167.9 263 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.1e-38 162.9 157 53.5
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.5e-36 156.8 110 71.8
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 7.4e-36 154.5 167 55.1
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.3e-35 153.7 153 52.3
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 2.8e-35 152.5 157 49.0
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 1.8e-34 149.8 154 47.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 3.0e-29 132.5 140 46.4
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 3.7e-27 125.6 88 76.1
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.9e-20 103.2 74 71.6
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.1e-18 95.5 69 65.2
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 6.5e-16 88.2 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.9e-15 86.7 88 50.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-14 83.6 62 64.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 5.1e-13 78.6 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 1.5e-12 77.0 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.5e-12 76.3 137 35.8
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.5e-09 67.0 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 7.7e-09 64.7 37 86.5
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.2e-07 58.9 64 54.7


User provided reference genes

Program Settings