Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.0e-34 147.5 92 100.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.1e-28 127.9 95 88.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.6e-24 115.9 95 81.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.1e-20 101.7 83 84.3
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.1e-20 101.3 85 62.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 7.0e-20 100.5 98 59.2
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 9.1e-20 100.1 85 61.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.5e-19 97.8 97 54.6
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.7e-19 97.1 85 57.6
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.0e-18 96.7 99 58.6
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.0e-18 96.7 102 71.6
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.0e-18 96.7 101 56.4
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.2e-18 95.5 105 54.3
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.9e-18 95.1 100 56.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.1e-17 93.2 93 55.9
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.5e-17 92.8 101 70.3
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.1e-16 89.0 97 54.6
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.8e-16 88.6 91 53.8
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.0e-15 86.7 101 51.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.4e-15 86.3 95 51.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.8e-15 85.9 91 54.9
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.0e-15 85.1 95 64.2
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.0e-15 85.1 95 65.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.0e-15 84.7 94 47.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 5.2e-15 84.3 107 51.4
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.2e-15 84.3 110 48.2
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.8e-15 84.0 97 61.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.8e-15 84.0 97 62.9
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.8e-15 84.0 99 48.5
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-14 83.2 97 62.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-14 83.2 84 53.6
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.5e-14 82.8 91 51.6
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.6e-14 82.0 99 48.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.7e-14 80.9 97 49.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 7.5e-14 80.5 99 48.5
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 9.8e-14 80.1 101 48.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 9.8e-14 80.1 92 50.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 95 48.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.3e-13 79.7 95 48.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.7e-13 79.3 111 47.7
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.8e-13 78.6 101 54.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.8e-13 78.6 104 49.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.7e-13 78.2 97 49.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-13 78.2 83 51.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.7e-13 78.2 96 46.9
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.9e-13 77.8 109 45.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.3e-13 77.4 106 46.2
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.3e-13 77.4 99 45.5
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 6.3e-13 77.4 109 45.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 8.3e-13 77.0 98 41.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.1e-12 76.6 88 48.9
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.1e-12 76.6 95 47.4
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-12 76.6 95 47.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.1e-12 76.6 95 47.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.4e-12 76.3 109 45.0
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.8e-12 75.9 92 45.7
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.8e-12 75.9 105 45.7
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-12 75.9 88 48.9
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.4e-12 75.5 96 45.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.4e-12 75.5 96 43.8
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.1e-12 75.1 112 44.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.1e-12 75.1 84 50.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.1e-12 75.1 92 45.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.1e-12 75.1 89 47.2
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.1e-12 74.7 104 41.3
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 7.0e-12 73.9 99 45.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 7.0e-12 73.9 91 52.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 9.2e-12 73.6 86 46.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.2e-12 73.6 92 44.6
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-11 72.8 83 53.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.6e-11 72.8 85 48.2
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-11 72.8 88 45.5
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-11 72.8 95 46.3
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-11 72.8 84 50.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.6e-11 72.8 96 43.8
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.6e-11 72.8 103 47.6
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.6e-11 72.8 94 43.6
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.6e-11 72.8 100 45.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.0e-11 72.4 87 47.1
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.0e-11 72.4 87 49.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.0e-11 72.4 92 47.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-11 72.0 95 46.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.7e-11 72.0 94 48.9
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.5e-11 71.6 89 47.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.5e-11 71.2 95 43.2
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.5e-11 71.2 93 48.4
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 5.9e-11 70.9 91 44.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.9e-11 70.9 95 45.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.9e-11 70.9 93 48.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.8e-11 70.5 95 45.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.8e-11 70.5 106 45.3
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-10 70.1 96 44.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.0e-10 70.1 89 43.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-10 69.7 88 52.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.7e-10 69.3 89 52.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.7e-10 69.3 87 51.7
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-10 68.9 94 42.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-10 68.9 94 42.6
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.3e-10 68.9 94 42.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.3e-10 68.9 103 41.7
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-10 68.6 91 40.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-10 68.6 91 40.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.9e-10 68.6 92 44.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.9e-10 68.6 94 42.6
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.8e-10 68.2 95 44.2
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.8e-10 68.2 88 47.7
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.0e-10 67.8 108 46.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.6e-10 67.4 89 46.1
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.1e-09 66.6 98 44.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.1e-09 66.6 92 43.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-09 66.2 97 44.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.9e-09 65.9 89 42.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.9e-09 65.9 96 54.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.9e-09 65.9 83 48.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.9e-09 65.9 93 43.0
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.5e-09 65.5 94 44.7
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.3e-09 65.1 91 48.4
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.3e-09 64.7 97 41.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 5.6e-09 64.3 94 40.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.6e-09 64.3 88 43.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.5e-09 63.5 96 46.9
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 9.5e-09 63.5 109 42.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-08 63.2 98 45.9
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.2 96 40.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-08 63.2 96 40.6
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.2e-08 63.2 97 41.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-08 63.2 101 37.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-08 63.2 90 44.4
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.6e-08 62.8 93 44.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-08 62.8 90 46.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.6e-08 62.8 91 45.1
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-08 62.8 98 42.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.1e-08 62.4 96 41.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.6e-08 61.6 96 40.6
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.1e-08 60.8 99 42.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-07 60.1 89 44.9
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-07 60.1 83 48.2
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.4e-07 59.7 82 41.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.8e-07 59.3 80 47.5
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.8e-07 59.3 90 42.2
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.3e-07 58.9 88 45.5
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.3e-07 58.9 88 44.3
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.3e-07 58.9 107 38.3
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.3e-07 58.9 86 38.4
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.0e-07 58.5 92 44.6
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 3.0e-07 58.5 92 44.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.0e-07 58.5 88 39.8
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 5.2e-07 57.8 88 44.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-07 57.8 83 44.6
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-07 57.8 83 44.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-07 57.8 90 44.4
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 5.2e-07 57.8 90 44.4
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 5.2e-07 57.8 83 44.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 5.2e-07 57.8 103 41.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.8e-07 57.4 97 43.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 8.9e-07 57.0 83 44.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-06 56.6 108 35.2
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-06 56.2 87 42.5
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-06 55.8 82 43.9
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 4.4e-06 54.7 88 44.3
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-06 54.7 116 50.0
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-06 54.7 116 50.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.7e-06 54.3 129 45.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.7e-06 54.3 96 36.5
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 7.5e-06 53.9 80 43.8
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 7.5e-06 53.9 80 43.8
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 7.5e-06 53.9 87 39.1


User provided reference genes

Program Settings