Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 4.1e-50 201.1 100 100.0
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 6.4e-43 177.2 100 88.0
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.7e-33 145.2 97 78.4
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 2.3e-32 142.1 80 87.5
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 4.3e-31 137.9 79 87.3
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 7.3e-31 137.1 100 69.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 9.6e-31 136.7 99 69.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 9.6e-31 136.7 99 72.7
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 8.1e-30 133.7 100 68.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.4e-28 127.9 102 69.6
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 5.8e-28 127.5 100 73.0
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.2e-27 125.6 99 65.7
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 4.9e-27 124.4 100 68.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.9e-27 124.4 100 68.0
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 1.1e-26 123.2 98 70.4
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.1e-26 123.2 107 66.4
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.1e-26 123.2 100 65.0
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.4e-26 122.9 100 66.0
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.4e-26 122.1 100 66.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 4.2e-26 121.3 99 65.7
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.7e-25 118.6 104 69.2
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.5e-25 118.2 105 64.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 3.5e-25 118.2 99 63.6
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 4.6e-25 117.9 98 61.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 6.0e-25 117.5 99 64.6
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 7.8e-25 117.1 100 61.0
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.0e-24 116.7 102 60.8
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.0e-24 116.7 100 64.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.3e-24 116.3 100 63.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.3e-24 116.3 100 63.0
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 3.9e-24 114.8 99 61.6
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 5.1e-24 114.4 99 57.6
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 5.1e-24 114.4 107 63.6
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 5.1e-24 114.4 107 61.7
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 1.1e-23 113.2 96 59.4
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.5e-23 112.1 99 59.6
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 3.3e-23 111.7 99 57.6
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 4.3e-23 111.3 99 61.6
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 5.6e-23 110.9 99 61.6
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 7.3e-23 110.5 61 86.9
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 9.6e-23 110.2 99 54.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.6e-22 109.4 90 68.9
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 2.1e-22 109.0 76 75.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 2.8e-22 108.6 97 57.7
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.8e-22 108.6 75 72.0
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 4.8e-22 107.8 99 59.6
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 6.2e-22 107.5 100 53.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 6.2e-22 107.5 100 55.0
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.1e-21 105.1 100 59.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.3e-21 104.4 100 51.0
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 5.3e-21 104.4 91 69.2
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.2e-20 103.2 98 52.0
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.2e-20 103.2 98 63.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.0e-20 102.4 105 57.1
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.0e-20 102.4 80 67.5
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.8e-20 100.9 98 58.2
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 5.8e-20 100.9 98 58.2
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 5.8e-20 100.9 125 50.4
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 7.6e-20 100.5 99 55.6
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 9.9e-20 100.1 82 67.1
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.7e-19 99.4 102 54.9
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.7e-19 99.4 98 55.1
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.2e-19 99.0 98 57.1
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.9e-19 98.6 82 59.8
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 2.9e-19 98.6 95 58.9
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.8e-19 98.2 80 62.5
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.8e-19 98.2 90 60.0
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 8.4e-19 97.1 101 53.5
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.4e-18 96.3 124 46.0
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 4.2e-18 94.7 101 55.4
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 4.2e-18 94.7 101 55.4
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.1e-18 94.0 65 72.3
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.2e-17 93.2 79 62.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-17 92.8 100 54.0
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 2.1e-17 92.4 100 55.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.7e-17 92.0 75 56.0
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.7e-17 92.0 82 61.0
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.7e-17 92.0 75 62.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.7e-17 92.0 69 63.8
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.7e-17 92.0 66 65.2
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 6.0e-17 90.9 79 59.5
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.3e-16 89.7 75 61.3
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 1.8e-16 89.4 78 59.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 1.8e-16 89.4 75 56.0
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 3.0e-16 88.6 67 64.2
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 3.9e-16 88.2 88 55.7
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 5.1e-16 87.8 72 61.1
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.1e-16 87.8 104 53.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 5.1e-16 87.8 79 58.2
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 6.7e-16 87.4 88 53.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 6.7e-16 87.4 56 71.4
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 8.7e-16 87.0 79 57.0
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.1e-15 86.7 62 67.7
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.1e-15 86.7 62 67.7
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.9e-15 85.9 83 59.0
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 3.3e-15 85.1 76 57.9
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 4.3e-15 84.7 84 57.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 5.6e-15 84.3 54 74.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 5.6e-15 84.3 81 53.1
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 2.1e-14 82.4 80 56.2
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.8e-14 81.3 99 46.5
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 4.8e-14 81.3 54 70.4
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 4.8e-14 81.3 54 70.4
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 4.8e-14 81.3 54 70.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 8.1e-14 80.5 99 45.5
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 8.1e-14 80.5 56 71.4
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-13 80.1 94 46.8
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-13 80.1 94 46.8
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 1.1e-13 80.1 94 46.8
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.4e-13 79.7 54 70.4
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.4e-13 79.7 54 70.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.8e-13 79.3 58 67.2
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.8e-13 79.3 66 59.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.8e-13 79.3 66 59.1
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.4e-13 79.0 55 70.9
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 5.3e-13 77.8 53 67.9
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 6.9e-13 77.4 46 82.6
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 6.9e-13 77.4 41 87.8
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.5e-12 76.3 86 55.8
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 4.5e-12 74.7 58 65.5
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 4.5e-12 74.7 58 65.5
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 4.5e-12 74.7 58 65.5
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 7.6e-12 73.9 91 45.1
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.0e-11 73.6 54 70.4
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.0e-11 73.6 84 57.1
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 4.2e-10 68.2 118 39.8
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 7.1e-10 67.4 98 48.0
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 7.1e-10 67.4 98 48.0
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 7.1e-10 67.4 83 50.6
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 1.6e-09 66.2 46 67.4
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 3.5e-09 65.1 81 48.1
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 3.9e-08 61.6 93 49.5
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 5.1e-08 61.2 46 60.9
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 6.7e-08 60.8 39 71.8
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 2.5e-07 58.9 53 54.7
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 9.6e-07 57.0 80 42.5
TPR.G28753 Trifolium pratense HOM05D000292 ORTHO05D000172 1.3e-06 56.6 48 64.6
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 6.2e-06 54.3 102 40.2
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 6.2e-06 54.3 80 41.2


User provided reference genes

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