Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.2e-65 253.1 127 100.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.3e-64 249.6 127 98.4
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.7e-64 248.1 127 97.6
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-63 246.5 127 96.1
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.9e-61 238.0 128 92.2
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.1e-60 236.5 128 93.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.5e-60 236.1 127 92.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.6e-59 232.6 127 91.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.9e-56 221.9 127 86.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.9e-56 221.9 127 86.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 6.4e-56 220.7 127 89.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.1e-55 219.9 128 88.3
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.6e-53 210.7 127 85.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.6e-51 206.1 131 80.9
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.2e-51 204.1 130 81.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.2e-51 204.1 130 82.3
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 80.0
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.4e-50 202.2 127 81.9
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.0e-50 201.4 127 81.9
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.0e-50 201.4 127 81.9
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 5.2e-50 201.1 130 80.8
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.2e-50 201.1 129 79.1
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 9.0e-50 200.3 132 80.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 9.0e-50 200.3 130 79.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.2e-49 199.9 129 81.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.6e-49 198.7 130 79.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.4e-49 198.4 130 78.5
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.4e-49 198.4 130 78.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.8e-49 197.6 134 77.6
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 78.9
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 78.9
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-48 196.1 127 79.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.2e-48 195.7 127 79.5
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.9e-48 195.3 130 79.2
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.8e-48 194.9 131 77.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.4e-47 193.0 132 77.3
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 2.4e-47 192.2 130 79.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 4.2e-47 191.4 127 76.4
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.4e-47 191.0 130 77.7
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.4e-47 191.0 130 77.7
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 7.1e-47 190.7 129 76.7
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 9.3e-47 190.3 130 77.7
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 9.3e-47 190.3 130 77.7
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.2e-46 189.9 132 78.8
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 78.5
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 2.7e-46 188.7 129 79.8
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 4.6e-46 188.0 133 75.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 4.6e-46 188.0 133 76.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.0e-46 187.6 129 78.3
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.0e-46 187.6 127 75.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.8e-46 187.2 133 76.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 7.8e-46 187.2 130 74.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 7.8e-46 187.2 127 78.7
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-45 186.8 130 77.7
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-45 186.0 130 76.2
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.7e-45 186.0 130 73.8
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.7e-45 186.0 127 78.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.3e-45 185.7 130 73.8
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 2.3e-45 185.7 127 77.2
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 125 76.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 125 76.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 79.8
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.0e-45 185.3 132 76.5
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 5.1e-45 184.5 130 75.4
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 5.1e-45 184.5 133 73.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 6.6e-45 184.1 130 76.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 6.6e-45 184.1 130 76.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 6.6e-45 184.1 130 76.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 8.7e-45 183.7 132 77.3
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-44 183.3 133 74.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.5e-44 183.0 125 77.6
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.3e-44 181.8 130 71.5
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.3e-44 180.6 125 72.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.3e-44 180.6 127 76.4
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 9.6e-44 180.3 128 75.8
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 9.6e-44 180.3 129 76.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.6e-44 180.3 135 73.3
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.6e-44 180.3 128 75.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.3e-43 179.9 129 72.9
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.6e-43 179.5 129 74.4
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.1e-43 179.1 115 77.4
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.1e-43 179.1 130 75.4
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 74.6
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.8e-43 178.7 135 73.3
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.8e-43 178.7 132 75.0
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.6e-43 178.3 131 71.8
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.8e-43 177.9 130 74.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.2e-43 177.6 124 75.0
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.1e-42 176.8 130 73.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 74.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 73.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 72.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 130 72.3
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 3.1e-42 175.3 127 73.2
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.0e-42 174.9 115 78.3
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 130 72.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 72.7
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.4e-41 171.8 125 74.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.5e-41 171.4 118 73.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.8e-41 171.0 128 74.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 7.6e-41 170.6 130 71.5
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.6e-41 170.6 129 75.2
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.6e-41 170.6 129 75.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 7.6e-41 170.6 129 75.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.6e-41 170.6 125 74.4
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.3e-40 169.9 127 71.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.2e-40 169.1 127 73.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.2e-40 169.1 127 72.4
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.8e-40 168.3 123 70.7
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 6.4e-40 167.5 103 83.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 8.4e-40 167.2 110 77.3
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.1e-39 166.8 125 71.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-39 166.4 135 71.9
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.2e-39 165.2 126 69.0
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.2e-39 164.9 106 81.1
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.9e-38 160.6 98 81.6
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.9e-38 160.6 125 68.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.9e-38 160.6 125 68.0
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.3e-37 159.8 122 70.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.3e-37 159.1 110 74.5
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 110 73.6
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.9e-37 158.3 105 80.0
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 8.7e-37 157.1 98 80.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 110 72.7
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.4e-36 154.1 130 67.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.1e-34 150.2 126 61.9
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.2e-33 146.7 127 66.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.5e-33 146.4 114 66.7
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.0e-33 146.0 120 65.8
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.0e-33 146.0 115 67.0
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 3.8e-32 141.7 126 61.9
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 6.4e-32 141.0 95 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.2e-31 138.3 133 57.9
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.5e-31 137.9 95 74.7
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.9e-29 131.7 96 74.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 5.1e-29 131.3 83 78.3
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.1e-29 131.3 75 85.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.3e-28 128.6 125 60.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.6e-27 126.3 75 81.3
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 8.2e-27 124.0 127 59.1
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.4e-25 118.6 69 84.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.4e-25 118.6 126 59.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-24 115.2 95 67.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.9e-23 112.8 123 55.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 7.1e-23 110.9 97 62.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.9e-22 107.5 94 61.7
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-20 103.2 79 69.6
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.3e-20 102.1 74 71.6
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.7e-19 98.6 68 72.1
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.8e-18 96.3 94 62.8
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.8e-18 96.3 96 55.2
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.9e-16 89.0 70 67.1
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-16 88.2 46 95.7
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.4e-15 86.7 67 59.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.8e-08 62.0 72 51.4


User provided reference genes

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