Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G268400 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 1.5e-150 536.2 286 100.0
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 6.0e-78 295.0 288 56.2
VMungo0720G0515 Vigna mungo HOM05D008136 ORTHO05D002052 2.3e-77 293.1 286 61.5
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 1.1e-55 221.1 234 49.1
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 1.5e-49 200.7 258 45.3
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 2.0e-44 183.7 255 44.3
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 2.0e-41 173.7 215 45.1
Glyma.19G199000 Glycine max HOM05D008136 ORTHO05D002052 1.4e-39 167.5 218 42.2
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 1.2e-38 164.5 298 39.3
Psat3g029080 Pisum sativum HOM05D008136 ORTHO05D002052 3.3e-36 156.4 215 41.9
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 1.8e-34 150.6 220 40.0
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 1.8e-34 150.6 262 37.4
VMungo1383G0618 Vigna mungo HOM05D008136 ORTHO05D002052 4.1e-34 149.4 219 37.9
Lalb_Chr14g0368861 Lupinus albus HOM05D008136 ORTHO05D002052 3.2e-23 113.2 222 32.0
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 8.5e-16 88.6 255 27.8
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 1.1e-15 88.2 268 28.7
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.5e-15 87.8 250 26.0
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 9.5e-15 85.1 228 29.4
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 2.8e-14 83.6 293 27.0
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 3.6e-14 83.2 238 26.5
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 6.1e-14 82.4 298 26.5
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 6.1e-14 82.4 298 26.5
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 8.0e-14 82.0 261 26.8
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.0e-13 81.6 302 26.5
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 1.4e-13 81.3 270 25.6
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 1.8e-13 80.9 259 25.5
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.3e-13 80.5 167 26.3
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 3.0e-13 80.1 182 28.0
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 4.0e-13 79.7 284 30.3
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 6.8e-13 79.0 235 25.1
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 6.8e-13 79.0 244 28.7
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 8.8e-13 78.6 281 29.2
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 8.8e-13 78.6 236 28.8
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 8.8e-13 78.6 220 27.7
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.5e-12 77.8 223 26.5
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 1.5e-12 77.8 245 29.8
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 2.0e-12 77.4 206 25.7
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 2.0e-12 77.4 217 30.0
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 2.6e-12 77.0 191 25.7
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 2.6e-12 77.0 298 27.2
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 2.6e-12 77.0 191 25.7
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 2.6e-12 77.0 191 25.7
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 2.6e-12 77.0 298 27.2
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 3.4e-12 76.6 231 26.8
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 7.5e-12 75.5 235 30.2
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.8e-12 75.1 220 26.4
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 9.8e-12 75.1 193 25.4
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.3e-11 74.7 157 29.9
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.3e-11 74.7 239 26.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.2e-11 73.9 246 24.0
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 2.8e-11 73.6 281 26.3
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 4.9e-11 72.8 229 28.8
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 4.9e-11 72.8 229 28.8
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 4.9e-11 72.8 229 28.8
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 4.9e-11 72.8 196 24.0
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 8.3e-11 72.0 243 23.9
Lalb_Chr25g0288041 Lupinus albus HOM05D008136 ORTHO05D002052 1.1e-10 71.6 187 25.1
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.1e-10 71.6 237 24.1
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.1e-10 71.6 172 26.7
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 1.4e-10 71.2 208 25.5
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.8e-10 70.9 234 28.2
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.8e-10 70.9 224 25.9
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 4.1e-10 69.7 237 27.0
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 4.1e-10 69.7 275 23.3
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 4.1e-10 69.7 220 28.2
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 4.1e-10 69.7 220 28.2
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 4.1e-10 69.7 225 26.7
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.1e-10 69.7 225 24.9
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 5.4e-10 69.3 208 26.0
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 7.0e-10 68.9 250 28.4
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 7.0e-10 68.9 222 25.2
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 9.2e-10 68.6 232 25.4
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 9.2e-10 68.6 222 25.7
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.2e-10 68.6 149 24.8
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.2e-09 68.2 229 25.3
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-09 68.2 224 25.0
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.2e-09 68.2 221 25.8
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 1.6e-09 67.8 234 27.8
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.6e-09 67.8 262 24.8
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 2.0e-09 67.4 238 26.9
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.0e-09 67.4 229 25.3
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 2.0e-09 67.4 190 27.9
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.5e-09 66.6 248 24.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.5e-09 66.6 190 26.3
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 3.5e-09 66.6 240 24.2
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 3.5e-09 66.6 233 25.3
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 4.5e-09 66.2 183 24.0
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 5.9e-09 65.9 263 25.9
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.9e-09 65.9 190 25.8
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 7.8e-09 65.5 268 24.3
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 7.8e-09 65.5 187 26.2
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 7.8e-09 65.5 196 24.5
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 7.8e-09 65.5 260 26.2
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 7.8e-09 65.5 213 26.3
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.0e-08 65.1 238 26.5
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.0e-08 65.1 235 23.4
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 1.3e-08 64.7 229 26.2
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.3e-08 64.7 238 28.6
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.3e-08 64.7 283 27.9
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 2.3e-08 63.9 212 25.0
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 2.3e-08 63.9 182 27.5
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.9e-08 63.5 244 24.6
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 2.9e-08 63.5 227 25.6
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 3.8e-08 63.2 268 24.3
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 3.8e-08 63.2 241 25.7
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 3.8e-08 63.2 284 29.6
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 5.0e-08 62.8 229 26.6
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 6.6e-08 62.4 230 24.3
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 8.6e-08 62.0 243 24.7
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 8.6e-08 62.0 186 23.7
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.1e-07 61.6 242 26.4
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 1.1e-07 61.6 244 27.0
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 1.1e-07 61.6 273 28.2
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 1.5e-07 61.2 179 26.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.9e-07 60.8 246 23.6
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 1.9e-07 60.8 179 26.3
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 1.9e-07 60.8 265 23.0
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 2.5e-07 60.5 291 25.4
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 2.5e-07 60.5 182 27.5
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 2.5e-07 60.5 165 24.8
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 3.3e-07 60.1 221 24.0
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 3.3e-07 60.1 248 23.0
HanXRQChr09g0276481 Helianthus annuus HOM05D002137 ORTHO05D002144 3.3e-07 60.1 140 28.6
Lj3g0023997 Lotus japonicus HOM05D002687 ORTHO05D002052 3.3e-07 60.1 194 26.8
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 5.6e-07 59.3 217 24.4
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 5.6e-07 59.3 217 24.4
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 5.6e-07 59.3 217 24.4
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 5.6e-07 59.3 228 25.4
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 7.3e-07 58.9 198 24.2
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 7.3e-07 58.9 223 25.1
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 9.5e-07 58.5 214 24.8
Cfa009946 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.2e-06 58.2 195 24.6
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 1.2e-06 58.2 180 23.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-06 57.8 220 27.7
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-06 57.8 220 27.7
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 2.1e-06 57.4 232 25.9
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 2.8e-06 57.0 250 26.4
CARHR119770 Cardamine hirsuta HOM05D002687 ORTHO05D002052 2.8e-06 57.0 209 26.8
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 2.8e-06 57.0 174 26.4
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.6e-06 56.6 242 30.2
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 3.6e-06 56.6 176 22.7
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 3.6e-06 56.6 214 22.9
Manes.11G153200 Manihot esculenta HOM05D000980 ORTHO05D000649 4.7e-06 56.2 176 26.1
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 6.1e-06 55.8 237 22.8
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 8.0e-06 55.5 243 26.3
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 8.0e-06 55.5 243 26.3
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 8.0e-06 55.5 167 26.3
ClCG07G013740 Citrullus lanatus HOM05D002137 ORTHO05D002144 8.0e-06 55.5 150 26.0
Sed0014294 Sechium edule HOM05D002137 ORTHO05D002144 8.0e-06 55.5 152 27.6
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.0e-06 55.5 248 25.8


User provided reference genes

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