Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 2.6e-71 271.9 134 100.0
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 1.8e-56 222.6 131 85.5
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 4.5e-44 181.4 132 68.9
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 2.6e-39 165.6 132 64.4
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 1.2e-20 103.6 139 45.3
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 8.6e-19 97.4 141 47.5
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.5e-18 96.7 135 43.7
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 1.9e-18 96.3 139 45.3
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 3.3e-18 95.5 141 41.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 4.7e-17 91.7 144 42.4
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 8.1e-17 90.9 139 43.9
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 8.1e-17 90.9 133 47.4
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 3.1e-16 89.0 128 43.8
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 2.0e-15 86.3 140 40.0
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 3.2e-13 79.0 123 40.7
Glyma.03G204600 Glycine max HOM05D005113 ORTHO05D006045 1.6e-12 76.6 127 40.2
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.5e-12 75.5 121 37.2
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.5e-10 70.1 116 39.7
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.9e-10 69.7 126 38.9
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.3e-10 68.9 127 39.4
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 3.3e-10 68.9 127 39.4
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 4.3e-10 68.6 129 36.4
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.3e-10 68.6 126 37.3
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 5.6e-10 68.2 113 37.2
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 1.6e-09 66.6 138 37.7
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 2.8e-09 65.9 123 37.4
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 2.8e-09 65.9 119 37.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 3.6e-09 65.5 126 38.1
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 6.2e-09 64.7 127 34.6
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.4e-08 63.5 118 40.7
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.4e-08 63.5 116 34.5
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.8e-08 63.2 125 36.8
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.8e-08 63.2 114 36.0
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 2.4e-08 62.8 119 35.3
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 4.0e-08 62.0 130 36.9
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.0e-08 62.0 117 35.9
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.2e-08 61.6 132 34.1
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 5.2e-08 61.6 118 36.4
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.2e-07 60.5 81 42.0
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 1.5e-07 60.1 118 34.7
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 1.5e-07 60.1 119 36.1
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.0e-07 59.7 53 56.6
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.4e-07 58.9 126 32.5
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 4.4e-07 58.5 126 34.1
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.4e-07 58.5 53 56.6
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 5.8e-07 58.2 118 33.9
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 5.8e-07 58.2 123 33.3
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 5.8e-07 58.2 139 32.4
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 7.6e-07 57.8 116 35.3
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 7.6e-07 57.8 139 31.7
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 9.9e-07 57.4 63 54.0
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 9.9e-07 57.4 130 35.4
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.3e-06 57.0 123 33.3
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.3e-06 57.0 139 30.9
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-06 57.0 140 33.6
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-06 57.0 139 30.9
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.3e-06 57.0 129 32.6
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.7e-06 56.6 116 33.6
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.7e-06 56.6 129 34.9
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.7e-06 56.6 129 32.6
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.2e-06 56.2 63 52.4
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 2.2e-06 56.2 89 42.7
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 2.2e-06 56.2 125 33.6
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.9e-06 55.8 63 52.4
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.9e-06 55.8 63 52.4
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.9e-06 55.8 139 30.9
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.9e-06 55.8 139 30.9
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 2.9e-06 55.8 120 36.7
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 2.9e-06 55.8 117 31.6
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 3.8e-06 55.5 63 52.4
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 3.8e-06 55.5 63 52.4
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 3.8e-06 55.5 63 49.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 3.8e-06 55.5 63 52.4
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 3.8e-06 55.5 141 31.2
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 4.9e-06 55.1 63 52.4
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 4.9e-06 55.1 63 52.4
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 4.9e-06 55.1 63 52.4
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 6.4e-06 54.7 65 53.8
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 6.4e-06 54.7 63 52.4
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 8.4e-06 54.3 130 35.4


User provided reference genes

Program Settings