Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 9.9e-164 580.1 304 100.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.4e-157 558.9 304 95.7
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 5.9e-140 501.1 304 88.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.6e-124 449.1 305 80.7
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 7.7e-124 447.6 309 79.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.0e-123 447.2 309 79.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 5.2e-120 434.9 305 77.4
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.2e-118 429.5 301 78.1
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 8.3e-118 427.6 306 77.1
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 8.3e-118 427.6 304 76.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.3e-117 424.9 305 76.7
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 6.5e-115 417.9 312 75.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.6e-113 413.3 274 81.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.0e-112 408.7 307 73.6
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.4e-111 405.6 312 72.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.8e-110 401.7 303 72.6
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 4.8e-110 401.7 310 71.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.4e-109 400.2 266 75.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.2e-108 397.1 293 73.4
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.7e-108 396.0 270 75.6
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 3.5e-108 395.6 302 71.5
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.5e-108 395.2 310 70.0
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 4.5e-108 395.2 310 70.0
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.9e-108 394.8 306 71.2
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.0e-107 394.0 309 69.6
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.7e-107 393.3 309 69.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.9e-107 392.5 300 70.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.8e-107 392.1 312 67.6
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.6e-105 386.7 311 68.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 4.7e-105 385.2 311 67.8
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.7e-105 385.2 252 79.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.4e-104 383.6 313 67.7
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 3.0e-104 382.5 275 72.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.2e-104 381.7 311 67.2
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 6.8e-104 381.3 306 68.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.5e-103 380.2 265 75.5
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 2.0e-103 379.8 304 66.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 4.4e-103 378.6 267 73.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.7e-103 378.3 304 67.4
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 8.3e-102 374.4 253 75.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.8e-101 373.2 318 65.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.4e-101 372.9 302 65.6
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.2e-101 372.5 303 67.0
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.2e-101 372.5 303 67.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.4e-101 371.7 310 65.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 7.0e-101 371.3 312 66.3
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.2e-100 370.5 256 73.4
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.2e-100 370.5 255 73.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-100 370.5 261 73.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.2e-100 370.5 299 68.2
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.0e-100 369.8 303 67.0
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.0e-100 369.8 312 64.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.0e-100 369.8 302 66.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.8e-100 367.9 303 66.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.0e-99 367.5 301 66.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.0e-99 367.5 299 66.2
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.3e-99 367.1 287 67.6
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.7e-99 366.7 252 73.0
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.3e-99 366.3 307 65.1
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.9e-99 365.9 286 67.8
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.9e-99 365.9 265 70.2
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.9e-99 365.9 289 66.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 6.6e-99 364.8 252 73.0
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 8.6e-99 364.4 256 71.1
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 8.6e-99 364.4 256 71.1
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 8.6e-99 364.4 312 65.1
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.6e-98 361.7 298 63.1
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 7.3e-98 361.3 295 63.7
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.1e-97 359.8 299 64.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 3.6e-97 359.0 285 66.7
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.7e-97 358.6 256 69.1
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.8e-96 356.7 289 63.7
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 4.0e-96 355.5 296 62.2
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.0e-96 355.5 293 66.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.2e-96 355.1 300 63.3
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 8.9e-96 354.4 296 61.8
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-95 354.0 299 63.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.5e-95 353.6 266 69.2
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.0e-95 353.2 307 60.6
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 2.0e-95 353.2 315 62.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.6e-95 352.8 289 65.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.4e-95 352.1 266 68.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 5.8e-95 351.7 261 68.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 5.8e-95 351.7 236 74.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.5e-95 351.3 295 62.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.5e-95 351.3 296 64.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.5e-95 351.3 299 62.9
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 9.8e-95 350.9 304 60.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 9.8e-95 350.9 304 60.5
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 9.8e-95 350.9 302 62.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.2e-94 349.7 313 62.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.7e-94 349.0 304 61.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.1e-93 347.4 257 68.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-93 347.4 304 60.2
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.1e-93 347.4 313 63.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-93 347.4 273 67.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.4e-93 346.3 292 65.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.4e-93 346.3 363 55.6
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 7.0e-93 344.7 312 59.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.7e-92 342.8 277 67.5
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 4.6e-92 342.0 236 69.9
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 7.8e-92 341.3 262 69.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.0e-91 340.9 306 60.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.3e-91 340.5 282 62.4
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.9e-91 339.0 236 71.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 6.2e-89 331.6 294 59.5
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.2e-87 327.4 256 69.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.5e-87 327.0 284 60.6
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.7e-86 323.6 394 50.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.9e-86 322.8 324 59.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 4.9e-86 322.0 292 59.9
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.9e-86 322.0 305 58.7
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.1e-85 320.9 308 59.4
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.0e-83 314.3 297 59.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-83 313.9 327 54.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.1e-83 312.0 252 64.7
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.3e-82 308.9 297 57.2
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 4.3e-82 308.9 240 65.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.5e-82 307.8 258 62.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.6e-81 307.0 297 56.6
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 8.1e-81 304.7 281 59.8
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-80 304.3 275 60.0
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.8e-80 303.5 240 65.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.9e-80 301.2 381 50.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-79 300.4 384 50.3
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.6e-79 299.7 246 60.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.1e-77 291.6 294 58.8
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.0e-76 288.5 277 56.3
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.0e-75 286.2 296 54.1
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.8e-72 275.0 227 63.9
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 7.6e-71 271.6 262 60.7
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-66 257.3 222 59.0
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 9.9e-63 244.6 272 47.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.6e-60 235.7 174 65.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-58 231.1 253 49.8
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.5e-58 229.9 462 36.6
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.1e-56 224.6 188 67.6
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 9.9e-55 218.0 309 46.6
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.8e-54 216.1 303 40.9
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.2e-52 211.1 235 46.8
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 3.9e-51 206.1 236 44.9
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.9e-50 203.8 131 77.9
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.5e-50 203.4 300 43.0
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.4e-48 196.8 143 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.9e-46 189.1 189 49.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.9e-35 152.9 142 56.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.8e-27 127.5 118 53.4
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.2e-22 110.5 122 58.2
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.0e-19 101.7 79 63.3
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.1e-18 98.2 107 43.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.9e-14 83.6 69 60.9
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 8.0e-12 75.5 186 34.9
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.3e-11 73.9 72 43.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.3e-11 73.9 72 52.8
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 4.4e-10 69.7 51 64.7
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 9.7e-10 68.6 146 34.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.3e-09 65.9 52 71.2
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.8e-08 64.3 105 36.2
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 2.2e-06 57.4 63 65.1
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 2.9e-06 57.0 199 28.6


User provided reference genes

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