Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.5e-112 408.3 205 100.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.1e-96 355.9 205 88.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.5e-67 260.0 209 68.9
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 6.7e-63 244.6 207 66.2
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.4e-52 210.3 206 59.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.1e-49 200.7 195 61.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.5e-49 199.5 203 60.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.2e-49 198.7 212 58.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.2e-48 197.2 210 59.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.8e-47 193.4 210 55.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.7e-45 186.8 211 52.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.1e-44 184.1 210 53.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.4e-44 183.0 196 54.6
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.2e-42 176.4 212 53.8
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.9e-42 176.0 209 53.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.8e-42 175.6 211 51.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.1e-40 169.9 207 50.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.7e-40 168.7 208 50.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.4e-38 161.4 216 48.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.2e-37 159.8 183 50.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.7e-37 159.1 219 46.6
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-36 157.5 219 47.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-36 157.5 195 49.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.4e-36 156.4 224 45.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.1e-36 156.0 218 48.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-35 154.1 208 48.6
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.5e-35 152.5 220 46.4
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 7.7e-35 151.4 207 49.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.2e-34 149.8 221 45.7
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.9e-34 149.4 216 44.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.8e-34 149.1 161 55.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-34 149.1 220 44.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-34 149.1 220 44.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-34 149.1 220 44.5
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.0e-34 148.7 192 47.9
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.0e-34 148.7 179 50.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 5.0e-34 148.7 218 45.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 6.5e-34 148.3 206 45.6
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.5e-34 147.9 222 45.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.5e-34 147.9 222 45.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.5e-34 147.9 222 45.0
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 8.5e-34 147.9 186 47.8
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 8.5e-34 147.9 216 45.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-33 147.1 208 46.6
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.5e-33 146.4 219 43.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.5e-33 146.4 219 44.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.2e-33 145.6 209 46.4
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 5.5e-33 145.2 206 46.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-32 143.7 208 45.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.6e-32 143.7 187 47.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-32 143.3 214 47.7
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.7e-32 142.9 177 48.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.7e-32 142.1 218 45.4
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 4.7e-32 142.1 205 46.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.0e-32 141.4 211 46.4
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.4e-31 140.6 208 44.7
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-31 140.2 208 44.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.3e-31 139.8 189 48.1
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.7e-31 138.3 196 42.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.2e-30 137.5 184 46.7
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-30 137.1 223 43.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.0e-30 136.7 208 43.3
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.6e-30 136.3 189 45.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-30 136.3 181 45.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.3e-30 136.0 192 45.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.7e-30 135.2 201 42.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 9.7e-30 134.4 217 44.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-29 134.0 208 43.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.3e-29 134.0 207 44.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.7e-29 133.7 205 44.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.2e-29 133.3 200 44.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.7e-29 132.5 204 44.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.7e-29 132.5 220 44.1
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 6.3e-29 131.7 213 43.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.3e-29 131.7 211 42.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 8.2e-29 131.3 201 42.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-28 130.2 199 45.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.4e-28 129.8 199 45.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.4e-28 129.8 212 41.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.1e-28 129.4 184 44.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.1e-28 129.0 197 44.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 7.0e-28 128.3 213 41.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.2e-27 127.5 182 45.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.6e-27 127.1 220 40.5
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-27 126.7 175 43.4
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.0e-27 126.7 193 42.0
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.5e-27 125.6 199 48.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.5e-27 125.6 199 48.7
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 5.9e-27 125.2 235 40.4
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.3e-26 124.0 211 43.6
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.3e-26 124.0 220 40.9
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.2e-26 123.2 190 44.7
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.8e-26 122.5 175 43.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.0e-26 122.1 181 47.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 5.0e-26 122.1 180 44.4
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 5.0e-26 122.1 185 44.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.5e-26 121.7 188 43.6
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 8.5e-26 121.3 201 42.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-25 120.9 179 44.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-25 120.2 178 43.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.5e-25 119.8 177 42.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.5e-25 119.8 178 42.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 3.2e-25 119.4 201 42.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-25 119.4 200 43.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 5.5e-25 118.6 217 41.9
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.5e-25 118.6 203 42.9
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.5e-25 118.6 181 42.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 9.4e-25 117.9 169 44.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-24 117.5 177 46.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-24 116.7 182 45.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.1e-24 116.7 176 48.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.6e-24 115.9 177 42.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.6e-24 115.9 215 40.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.6e-24 115.9 115 53.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-24 115.5 171 42.1
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 4.7e-24 115.5 169 44.4
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.7e-24 115.5 169 44.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-23 114.4 177 42.4
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.0e-23 114.4 172 43.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.0e-23 114.4 202 37.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.8e-23 113.6 173 43.4
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-23 112.8 171 42.1
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.0e-23 112.5 227 35.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.0e-23 112.5 173 41.6
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 4.0e-23 112.5 175 41.1
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.2e-23 112.1 178 43.3
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 5.2e-23 112.1 221 36.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 8.8e-23 111.3 212 38.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-22 110.2 182 40.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.0e-22 110.2 204 38.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 4.4e-22 109.0 196 41.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 5.7e-22 108.6 173 41.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.2e-21 106.7 216 38.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.8e-21 106.3 174 42.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.3e-21 104.8 186 41.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.1e-20 104.4 176 40.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-20 104.0 187 36.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.8e-20 103.6 201 38.8
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.0e-20 101.7 191 38.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.1e-20 101.3 184 37.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.1e-20 101.3 215 35.8
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-19 100.9 167 41.3
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.6e-19 100.5 180 38.3
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-19 100.5 158 42.4
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.5e-19 99.0 126 46.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.9e-19 98.6 154 40.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 7.7e-19 98.2 149 41.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-18 97.4 155 39.4
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-18 96.3 168 39.9
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-18 94.7 198 36.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.6e-18 94.7 116 49.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-17 93.6 150 38.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.9e-17 93.6 183 37.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.9e-17 93.6 174 40.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.5e-17 92.0 122 43.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-16 90.9 183 38.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.6e-16 90.5 183 37.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 6.1e-16 88.6 119 46.2
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 8.8e-15 84.7 138 38.4
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.0e-14 83.6 276 29.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-14 83.2 177 36.7
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 7.5e-14 81.6 214 34.1
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 7.5e-14 81.6 214 34.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 9.8e-14 81.3 215 34.0
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 9.8e-14 81.3 139 36.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.9e-13 79.0 182 35.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.9e-13 79.0 139 36.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.9e-13 79.0 122 44.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.3e-13 78.6 175 37.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-12 77.4 165 32.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.1e-12 75.9 177 34.5
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.1e-12 75.9 178 34.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.4e-12 75.5 176 34.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 9.2e-12 74.7 177 33.9
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.2e-12 74.7 177 34.5
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-11 73.6 177 34.5
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.7e-11 73.2 122 42.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.8e-11 71.6 180 32.2
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.9e-10 69.7 169 32.0
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.6e-10 68.6 101 41.6
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 4.0e-07 59.3 115 37.4
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.7e-06 55.5 85 43.5
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 5.7e-06 55.5 209 26.8
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.8e-06 54.7 68 45.6


User provided reference genes

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