Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.6e-64 247.7 119 100.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 8.7e-55 216.9 120 86.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 4.3e-54 214.5 112 89.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-53 211.5 117 83.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 2.6e-51 205.3 118 81.4
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 6.4e-50 200.7 119 79.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 7.1e-49 197.2 117 80.3
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 9.3e-49 196.8 118 78.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.7e-48 195.3 113 80.5
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 2.3e-47 192.2 96 88.5
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 5.1e-47 191.0 106 85.8
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.1e-47 191.0 96 87.5
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.6e-47 190.7 94 89.4
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.1e-46 189.9 116 77.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.1e-46 189.9 116 75.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.9e-46 189.1 96 87.5
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.5e-46 188.7 96 86.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 2.5e-46 188.7 96 87.5
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.3e-46 188.0 106 84.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 4.3e-46 188.0 110 78.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 5.6e-46 187.6 117 75.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 7.3e-46 187.2 119 73.9
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.3e-46 187.2 109 75.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.6e-46 186.8 120 73.3
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.6e-46 186.8 120 73.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.6e-45 186.0 105 81.9
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.1e-45 185.7 105 81.9
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.1e-45 185.7 105 81.0
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 2.1e-45 185.7 106 80.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.8e-45 185.3 116 75.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.8e-45 185.3 105 81.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.6e-45 184.9 108 79.6
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.6e-45 184.9 115 75.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.8e-45 184.5 114 78.9
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 6.2e-45 184.1 115 73.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 6.2e-45 184.1 116 74.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.2e-45 184.1 114 75.4
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.2e-45 184.1 113 74.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 8.1e-45 183.7 115 74.8
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.1e-44 183.3 116 74.1
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.1e-44 183.3 111 75.7
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.4e-44 182.2 117 74.4
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.4e-44 182.2 112 76.8
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 4.0e-44 181.4 101 82.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 9.0e-44 180.3 117 74.4
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 9.0e-44 180.3 118 72.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.2e-43 179.9 105 78.1
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.5e-43 179.5 99 82.8
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.0e-43 179.1 105 81.0
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.5e-43 177.9 116 72.4
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 4.5e-43 177.9 110 78.2
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.6e-43 177.2 116 73.3
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 9.9e-43 176.8 114 73.7
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 2.2e-42 175.6 117 76.1
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.2e-42 175.6 103 82.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 6.4e-42 174.1 103 79.6
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 6.4e-42 174.1 103 79.6
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 8.4e-42 173.7 86 93.0
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.1e-41 173.3 119 66.4
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.9e-41 172.6 114 71.1
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.4e-41 171.0 113 73.5
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 7.1e-41 170.6 115 67.0
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.6e-40 169.5 116 66.4
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.1e-40 169.1 110 70.9
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.7e-40 168.7 108 72.2
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.5e-40 168.3 112 72.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.5e-40 168.3 120 70.8
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 6.0e-40 167.5 107 72.9
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.0e-39 166.8 119 66.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-39 166.8 112 71.4
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.0e-39 166.8 100 76.0
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.0e-39 166.8 119 68.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.3e-39 166.4 119 68.9
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.3e-39 166.4 99 75.8
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.8e-39 166.0 118 65.3
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.0e-39 165.2 119 68.9
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 3.0e-39 165.2 108 69.4
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 114 71.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 119 68.1
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 3.9e-39 164.9 105 73.3
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 5.1e-39 164.5 114 71.9
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 6.7e-39 164.1 107 71.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 6.7e-39 164.1 112 72.3
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 6.7e-39 164.1 110 72.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 6.7e-39 164.1 110 72.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 6.7e-39 164.1 109 69.7
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.7e-39 163.7 104 72.1
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 8.7e-39 163.7 104 73.1
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 8.7e-39 163.7 109 67.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-38 163.3 117 67.5
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-38 162.9 119 67.2
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 119 68.1
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.5e-38 162.9 119 68.1
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.5e-38 162.9 119 68.1
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 67.2
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 109 68.8
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 109 68.8
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.3e-38 161.8 114 71.1
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 3.3e-38 161.8 116 67.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 4.3e-38 161.4 99 73.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 4.3e-38 161.4 106 70.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 4.3e-38 161.4 106 70.8
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 5.6e-38 161.0 96 75.0
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-38 160.6 115 65.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 7.4e-38 160.6 110 70.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 7.4e-38 160.6 115 65.2
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 7.4e-38 160.6 115 65.2
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 7.4e-38 160.6 110 70.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 7.4e-38 160.6 115 65.2
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.4e-38 160.6 102 69.6
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.4e-38 160.6 111 67.6
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 9.6e-38 160.2 110 70.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 9.6e-38 160.2 95 75.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-37 159.8 106 70.8
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.6e-37 159.5 112 67.9
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.1e-37 159.1 113 68.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 101 71.3
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.7e-37 158.3 101 70.3
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.8e-37 157.9 111 66.7
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 4.8e-37 157.9 100 72.0
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 6.2e-37 157.5 115 64.3
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.2e-37 157.5 101 70.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 8.1e-37 157.1 120 64.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 8.1e-37 157.1 120 64.2
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.1e-37 157.1 101 70.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.1e-36 156.8 104 70.2
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.1e-36 156.8 87 77.0
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.4e-36 156.4 104 70.2
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 101 69.3
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.4e-36 155.6 110 70.0
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.2e-35 153.3 100 69.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 105 66.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.6e-35 150.6 81 80.2
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.2e-34 149.1 99 70.7
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.8e-34 148.3 86 76.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.8e-34 148.3 114 63.2
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.2e-33 145.2 114 64.0
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 7.1e-33 144.1 90 71.1
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.7e-30 134.4 103 61.2
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.6e-30 133.7 121 56.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.8e-29 131.3 100 63.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.7e-26 122.9 90 63.3
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.1e-24 115.9 100 57.0
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-23 112.8 68 79.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.9e-23 111.7 72 73.6
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 6.7e-23 110.9 97 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.2e-21 104.0 74 63.5
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.4e-20 103.2 110 51.8
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.6e-19 99.0 61 77.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.8e-18 95.1 59 71.2
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.4e-17 93.2 67 59.7
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 3.9e-15 85.1 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-14 80.9 70 62.9
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 8.2e-13 77.4 64 56.2
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 5.3e-12 74.7 57 63.2
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.7e-08 61.6 42 69.0
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 8.8e-07 57.4 55 50.9
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-06 56.6 112 40.2


User provided reference genes

Program Settings