Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.0e-45 184.9 131 100.0
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 5.3e-29 131.3 131 70.2
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.5e-23 113.2 137 54.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.4e-18 96.7 58 75.9
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.7e-17 92.4 143 46.9
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.0e-16 89.0 57 64.9
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 3.0e-16 89.0 60 68.3
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.9e-16 88.6 57 64.9
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.9e-15 86.3 59 72.9
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.9e-15 86.3 57 66.7
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.5e-15 85.9 56 66.1
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.5e-15 85.9 56 66.1
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.3e-15 85.1 57 64.9
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.3e-15 85.1 57 63.2
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 7.4e-15 84.3 61 60.7
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 7.4e-15 84.3 58 65.5
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.3e-14 83.6 57 63.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.3e-14 83.6 57 61.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.6e-14 83.2 57 61.4
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.1e-14 82.8 57 64.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.1e-14 82.8 57 61.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.1e-14 82.8 54 63.0
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.1e-14 82.8 54 63.0
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.8e-14 82.4 58 56.9
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-14 82.4 56 66.1
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 3.7e-14 82.0 59 64.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 3.7e-14 82.0 57 61.4
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 3.7e-14 82.0 51 68.6
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.8e-14 81.6 66 56.1
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 8.2e-14 80.9 57 61.4
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 8.2e-14 80.9 51 70.6
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-13 80.5 57 59.6
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.1e-13 80.5 57 61.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-13 80.5 57 61.4
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.4e-13 80.1 56 58.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.4e-13 80.1 59 61.0
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.4e-13 80.1 50 70.0
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-13 79.7 57 56.1
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-13 79.7 57 56.1
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-13 79.7 57 56.1
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.4e-13 79.3 57 57.9
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-13 79.3 57 57.9
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-13 79.0 51 72.5
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 4.1e-13 78.6 57 59.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 4.1e-13 78.6 55 70.9
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.3e-13 78.2 51 68.6
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.3e-13 78.2 57 57.9
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.3e-13 78.2 54 61.1
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.3e-13 78.2 50 68.0
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.3e-13 78.2 57 57.9
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 6.9e-13 77.8 56 57.1
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 6.9e-13 77.8 58 62.1
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.9e-13 77.8 59 54.2
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 6.9e-13 77.8 49 67.3
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 6.9e-13 77.8 58 62.1
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.0e-13 77.4 55 70.9
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 9.0e-13 77.4 57 57.9
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.2e-12 77.0 61 60.7
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.5e-12 76.6 59 57.6
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.5e-12 76.6 62 54.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.0e-12 76.3 58 56.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.0e-12 76.3 58 56.9
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.0e-12 76.3 57 54.4
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.6e-12 75.9 51 68.6
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.6e-12 75.9 56 55.4
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 2.6e-12 75.9 49 63.3
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 2.6e-12 75.9 59 59.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.6e-12 75.9 57 56.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.6e-12 75.9 49 63.3
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.4e-12 75.5 57 57.9
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.4e-12 75.5 72 50.0
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.5e-12 75.1 59 61.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.5e-12 75.1 59 61.0
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.5e-12 75.1 59 61.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 5.9e-12 74.7 50 66.0
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.9e-12 74.7 49 63.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.6e-12 74.3 57 59.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.6e-12 74.3 50 66.0
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 7.6e-12 74.3 125 39.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.0e-11 73.9 57 54.4
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.0e-11 73.9 57 54.4
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.3e-11 73.6 50 66.0
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.3e-11 73.6 54 64.8
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.3e-11 73.6 57 54.4
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-11 73.6 57 54.4
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-11 73.6 57 54.4
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.3e-11 73.6 49 65.3
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.7e-11 73.2 49 65.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.7e-11 73.2 49 63.3
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-11 73.2 57 54.4
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.2e-11 72.8 50 66.0
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.2e-11 72.8 59 55.9
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.2e-11 72.8 50 66.0
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.9e-11 72.4 49 67.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 3.8e-11 72.0 49 65.3
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 3.8e-11 72.0 49 59.2
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.5e-11 71.2 57 54.4
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 6.5e-11 71.2 53 62.3
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 6.5e-11 71.2 55 63.6
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.4e-11 70.9 57 54.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.1e-10 70.5 49 63.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.1e-10 70.5 58 56.9
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-10 70.5 56 58.9
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-10 69.7 49 61.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.9e-10 69.7 55 63.6
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.5e-10 69.3 49 61.2
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-10 69.3 49 59.2
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.5e-10 69.3 58 55.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.5e-10 69.3 64 50.0
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.2e-10 68.9 50 64.0
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 3.2e-10 68.9 64 48.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 3.2e-10 68.9 50 66.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 3.2e-10 68.9 63 49.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 4.2e-10 68.6 58 53.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 5.5e-10 68.2 49 59.2
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 5.5e-10 68.2 49 59.2
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-10 68.2 49 59.2
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 5.5e-10 68.2 49 59.2
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 5.5e-10 68.2 57 59.6
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 5.5e-10 68.2 59 54.2
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-10 67.8 49 59.2
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.2e-10 67.8 49 59.2
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 7.2e-10 67.8 50 60.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 9.3e-10 67.4 59 57.6
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-09 67.0 49 59.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-09 67.0 49 61.2
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-09 67.0 49 61.2
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-09 67.0 49 61.2
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.2e-09 67.0 53 64.2
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.6e-09 66.6 59 55.9
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 2.1e-09 66.2 49 61.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 2.1e-09 66.2 53 54.7
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.1e-09 66.2 49 61.2
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 2.7e-09 65.9 53 58.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-09 65.5 49 57.1
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-09 65.5 49 57.1
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-09 65.5 49 57.1
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.5e-09 65.5 51 60.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.6e-09 65.1 49 61.2
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 4.6e-09 65.1 55 52.7
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 4.6e-09 65.1 55 52.7
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 4.6e-09 65.1 55 52.7
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.6e-09 65.1 60 55.0
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.6e-09 65.1 50 62.0
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-09 64.7 49 59.2
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 6.1e-09 64.7 49 57.1
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 6.1e-09 64.7 53 52.8
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 7.9e-09 64.3 51 56.9
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 7.9e-09 64.3 49 55.1
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 1.0e-08 63.9 50 60.0
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-08 63.5 49 55.1
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-08 63.2 49 57.1
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-08 63.2 50 60.0
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-08 63.2 50 60.0
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-08 63.2 62 48.4
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-08 63.2 62 48.4
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 2.3e-08 62.8 70 48.6
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.3e-08 62.8 47 59.6
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-08 62.8 52 53.8
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 3.0e-08 62.4 48 58.3
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.0e-08 62.4 52 55.8
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.9e-08 62.0 49 53.1
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.9e-08 62.0 49 53.1
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 6.7e-08 61.2 47 57.4
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 6.7e-08 61.2 67 43.3
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.1e-07 60.5 45 60.0
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.1e-07 60.5 59 50.8
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.9e-07 59.7 53 52.8
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-07 59.3 49 55.1
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-07 59.3 49 55.1
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 3.3e-07 58.9 51 54.9
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.3e-07 58.5 47 53.2
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 4.3e-07 58.5 50 60.0
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 5.7e-07 58.2 56 42.9
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 7.4e-07 57.8 51 52.9
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 7.4e-07 57.8 51 52.9
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 1.6e-06 56.6 57 50.9
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 6.3e-06 54.7 45 55.6
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.3e-06 54.7 45 60.0


User provided reference genes

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