Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.7e-110 402.5 287 100.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 3.5e-78 295.8 289 84.1
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.7e-64 250.4 301 75.1
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.2e-48 196.8 291 70.1
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 9.7e-44 181.4 288 65.3
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.3e-43 181.0 297 66.0
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.1e-39 167.9 298 64.8
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 8.0e-38 161.8 296 61.1
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.4e-37 161.0 297 58.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.3e-37 160.2 297 63.3
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.2e-37 159.1 295 61.0
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.5e-36 157.5 296 62.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.6e-36 156.8 303 61.7
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.6e-36 156.8 289 63.0
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.4e-36 156.0 308 61.7
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.3e-35 154.5 309 61.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.7e-35 154.1 292 61.0
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.7e-35 154.1 296 64.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.2e-35 153.7 290 64.1
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.8e-35 153.3 291 61.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 3.7e-35 152.9 301 60.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 4.8e-35 152.5 285 65.6
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 6.3e-35 152.1 308 57.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 8.3e-35 151.8 297 59.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 8.3e-35 151.8 288 62.5
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.3e-35 151.8 295 59.7
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.1e-34 151.4 297 59.6
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.4e-34 150.2 327 59.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 2.4e-34 150.2 301 61.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.4e-34 150.2 292 62.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.1e-34 149.8 297 58.6
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.1e-34 149.8 295 57.6
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 4.1e-34 149.4 297 54.9
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 5.3e-34 149.1 296 59.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 9.1e-34 148.3 302 59.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.1e-34 148.3 209 52.6
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.6e-33 147.5 273 64.5
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 4.5e-33 146.0 310 57.7
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.7e-33 145.2 278 65.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.3e-32 144.4 206 51.9
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.2e-32 143.7 290 60.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 3.8e-32 142.9 295 60.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 3.8e-32 142.9 289 52.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 5.0e-32 142.5 291 63.2
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 8.5e-32 141.7 299 60.9
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 8.5e-32 141.7 290 62.1
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.5e-31 141.0 290 57.6
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.5e-31 141.0 202 53.0
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 279 63.8
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.2e-31 139.8 291 59.1
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.2e-31 139.8 202 49.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 4.2e-31 139.4 274 62.0
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 5.5e-31 139.0 298 59.1
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 7.2e-31 138.7 298 58.7
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 9.4e-31 138.3 198 49.0
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-30 137.1 200 50.0
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.6e-30 136.3 294 59.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 4.7e-30 136.0 301 56.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 6.1e-30 135.6 312 55.1
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 8.0e-30 135.2 292 61.0
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 8.0e-30 135.2 278 62.9
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 8.0e-30 135.2 278 59.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.8e-29 134.0 304 56.9
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.3e-29 133.7 221 46.6
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 5.2e-29 132.5 300 57.7
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 5.2e-29 132.5 293 60.1
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 5.2e-29 132.5 289 59.2
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.2e-29 132.5 288 60.8
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.8e-29 132.1 311 57.9
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.5e-28 131.0 293 60.4
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.4e-28 129.8 297 60.6
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.8e-28 128.3 288 61.5
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 9.8e-28 128.3 267 61.8
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.7e-27 127.5 306 57.2
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.8e-27 125.9 273 61.5
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.8e-27 125.9 307 54.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.8e-27 125.9 307 54.7
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 6.3e-27 125.6 305 56.1
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.3e-27 125.6 307 54.7
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.3e-27 125.6 305 56.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.3e-27 125.6 278 59.7
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 8.3e-27 125.2 228 67.1
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.3e-27 125.2 278 60.4
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 8.3e-27 125.2 278 60.4
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.8e-26 124.0 295 44.7
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.8e-26 124.0 279 48.0
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.1e-26 123.2 321 56.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 3.1e-26 123.2 211 45.5
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.0e-26 122.1 295 53.6
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.0e-25 120.6 306 58.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.7e-25 120.2 295 58.3
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.5e-25 119.8 286 55.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.7e-24 117.5 285 60.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 201 47.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.3e-24 117.1 201 45.8
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.6e-24 115.5 271 62.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.5e-23 114.4 286 54.9
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.3e-23 113.2 284 58.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.2e-23 112.8 189 46.0
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 5.5e-23 112.5 164 80.5
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.6e-22 110.9 280 56.4
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.1e-22 110.5 277 59.9
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.0e-22 108.6 305 53.1
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 5.2e-21 105.9 209 41.6
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 8.9e-21 105.1 295 55.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 8.9e-21 105.1 295 55.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 8.9e-21 105.1 295 55.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.5e-20 104.4 300 55.0
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.0e-20 104.0 307 51.1
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 3.4e-20 103.2 320 53.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 5.7e-20 102.4 314 52.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 7.5e-20 102.1 292 45.5
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 9.8e-20 101.7 236 45.8
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.7e-19 100.9 293 55.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 3.7e-19 99.8 306 52.0
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.7e-19 99.8 275 57.5
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.9e-19 99.4 295 54.6
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 6.3e-19 99.0 226 38.1
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 8.3e-19 98.6 289 53.6
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 8.3e-19 98.6 299 44.1
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.8e-18 97.4 294 54.4
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.8e-18 97.4 290 45.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.8e-18 97.4 170 45.3
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.4e-18 95.9 289 54.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.2e-18 95.1 292 53.1
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.6e-17 94.4 293 53.9
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.6e-17 94.4 287 50.2
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.0e-17 94.0 295 53.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.5e-17 93.2 297 51.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 3.5e-17 93.2 293 51.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 4.5e-17 92.8 292 53.4
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 5.9e-17 92.4 294 53.4
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.9e-17 92.4 289 50.9
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 5.9e-17 92.4 295 53.6
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.9e-17 92.4 273 53.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.0e-16 91.7 289 50.2
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.0e-16 91.7 282 55.0
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.0e-16 91.7 287 53.0
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.3e-16 91.3 283 42.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.3e-16 91.3 268 57.8
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.9e-16 90.1 289 42.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.9e-16 90.1 289 42.9
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.9e-16 90.1 289 49.8
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.9e-16 89.7 276 50.4
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.5e-15 87.0 287 51.9
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.3e-15 86.7 299 25.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.3e-15 86.7 288 49.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 4.3e-15 86.3 182 40.1
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.6e-15 85.9 223 36.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 3.6e-14 83.2 295 51.9
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 8.0e-14 82.0 289 52.2
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.8e-13 80.9 141 44.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.2e-12 78.2 268 52.6
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 9.8e-12 75.1 141 44.0
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.7e-11 74.3 309 35.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.2e-11 73.9 289 48.1
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.2e-10 68.6 188 36.7
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.6e-09 66.2 39 79.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.3e-08 63.9 265 50.9
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 6.6e-08 62.4 141 42.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.3e-07 60.1 301 37.5
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 5.6e-07 59.3 263 32.3
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 3.6e-06 56.6 39 66.7
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 8.0e-06 55.5 141 71.6


User provided reference genes

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