Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2741.8 1386 100.0
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2669.0 1386 96.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2617.0 1389 94.3
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2612.8 1389 94.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2590.1 1386 93.1
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2588.9 1386 93.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2587.4 1386 92.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2585.8 1386 92.9
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2567.0 1386 92.3
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2565.4 1386 92.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2562.7 1386 91.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2560.4 1386 91.6
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2560.4 1386 92.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2560.0 1386 91.8
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2557.3 1384 91.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2555.4 1386 92.1
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2555.0 1386 91.6
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2552.7 1387 91.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2551.9 1386 91.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1386 91.2
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2546.5 1386 91.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2544.2 1386 91.4
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2542.3 1386 91.3
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1386 91.1
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2541.5 1384 91.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2538.8 1386 91.3
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2536.1 1386 90.9
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2535.0 1386 90.7
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2533.1 1386 91.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2533.1 1386 90.5
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1401 89.9
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1386 90.9
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2530.0 1386 90.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2526.9 1386 90.3
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2525.7 1386 90.6
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2523.8 1386 89.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1386 90.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2518.4 1386 91.2
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2517.3 1386 90.7
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2517.3 1386 90.8
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1400 89.9
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2515.7 1386 90.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2513.8 1386 90.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2513.0 1388 89.7
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2511.1 1386 90.5
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2508.4 1386 89.7
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1387 90.0
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1386 89.8
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2502.6 1386 89.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1386 89.5
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2494.9 1386 89.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2493.8 1386 88.5
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2492.6 1386 88.5
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1386 89.2
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1386 89.3
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1386 89.1
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2489.5 1386 89.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2488.4 1386 89.1
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1386 89.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 89.0
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 89.0
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 89.0
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 87.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1397 88.2
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1386 88.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2480.7 1386 89.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1386 89.6
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2478.7 1386 88.5
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1413 87.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2463.7 1386 87.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1446 84.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2452.2 1387 87.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2451.4 1336 90.8
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2450.2 1386 88.3
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1387 87.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1388 86.8
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1385 87.7
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1386 87.3
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2435.6 1387 87.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2426.0 1386 86.7
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1354 88.4
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2425.2 1386 86.9
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2424.8 1389 86.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1386 86.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1386 86.9
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2419.0 1386 87.2
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1387 86.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1387 86.2
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1386 86.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1386 86.1
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1386 86.1
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1387 85.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2390.1 1386 86.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1389 86.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2372.4 1386 85.6
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2354.3 1405 83.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2350.9 1411 83.8
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2318.5 1262 91.4
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2305.8 1332 84.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2305.0 1261 91.4
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2288.5 1348 85.8
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2248.0 1265 88.9
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2206.8 1334 81.0
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2205.3 1334 80.6
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2199.1 1348 79.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1344 79.8
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1344 79.8
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2177.9 1333 79.1
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2003.4 1123 88.2
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1985.7 1111 88.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1984.9 1384 75.3
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1933.7 1404 73.7
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1895.6 1335 70.2
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1870.5 1359 68.0
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1708.7 1386 66.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1703.7 913 92.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1642.1 896 90.7
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1513.0 809 92.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1509.6 808 91.8
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1167.5 690 85.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1115.1 676 82.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.1e-305 1052.4 670 80.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.4e-302 1043.5 571 88.8
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.8e-265 920.2 592 79.4
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.7e-264 916.4 1199 43.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 9.6e-238 828.2 474 87.1
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.6e-237 827.4 474 86.9
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.1e-236 823.2 474 86.5
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 8.4e-218 761.9 474 81.0
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.9e-209 734.2 398 89.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 5.0e-178 629.8 1379 33.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.1e-160 571.2 1471 30.6
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.4e-111 408.3 1279 28.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.9e-92 345.5 175 98.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 4.7e-67 261.2 147 84.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.5e-62 245.0 123 97.6
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.8e-48 198.0 107 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.5e-44 185.7 174 59.8
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 5.4e-31 141.4 139 52.5
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.1e-27 129.4 99 67.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 8.0e-27 127.5 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.2e-19 103.6 61 82.0


User provided reference genes

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