Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 9.3e-172 606.7 286 100.0
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 2.5e-161 572.0 286 93.4
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 5.7e-161 570.9 282 93.3
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 5.3e-159 564.3 286 91.6
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 4.4e-153 544.7 285 89.1
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 1.3e-152 543.1 284 88.0
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.4e-151 538.9 284 88.7
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.2e-150 536.6 284 86.3
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.0e-150 535.8 284 84.9
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.7e-149 532.7 284 85.2
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 2.2e-149 532.3 284 85.6
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.2e-149 532.3 284 85.9
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.2e-149 532.3 284 85.9
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 3.8e-149 531.6 284 85.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 5.0e-149 531.2 284 84.9
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.5
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.5
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.2
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.2
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.5
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.5e-148 529.6 285 85.3
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 1.5e-148 529.6 284 84.9
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.5e-148 529.6 284 85.2
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.5e-148 529.6 284 84.5
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 2.5e-148 528.9 284 83.8
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 2.5e-148 528.9 284 84.9
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 4.2e-148 528.1 284 83.5
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 9.4e-148 526.9 284 83.1
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 3.6e-147 525.0 287 84.3
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 3.6e-147 525.0 283 85.2
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.7e-147 524.6 284 83.5
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 6.1e-147 524.2 281 84.0
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 8.0e-147 523.9 284 83.8
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 8.0e-147 523.9 284 83.1
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 1.4e-146 523.1 285 83.9
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 1.4e-146 523.1 285 83.9
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 3.0e-146 521.9 281 86.5
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 4.0e-146 521.5 285 83.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 6.7e-146 520.8 284 83.5
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 8.8e-146 520.4 286 82.5
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 83.1
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.1e-145 520.0 286 84.6
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.1e-145 520.0 284 82.0
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.3e-145 518.5 282 84.8
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 5.7e-145 517.7 284 83.1
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.3e-144 516.5 284 81.7
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 83.1
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.8e-144 515.4 281 82.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.8e-144 515.4 286 83.2
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.8e-144 515.4 281 85.1
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 84.9
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 82.0
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.3e-144 514.2 284 83.5
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-143 513.5 282 84.0
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 1.8e-143 512.7 285 82.5
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 2.4e-143 512.3 283 82.7
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 4.1e-143 511.5 285 82.5
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 7.0e-143 510.8 284 81.7
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 3.5e-142 508.4 281 83.6
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 4.5e-142 508.1 284 79.2
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 5.9e-142 507.7 284 80.6
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 7.7e-142 507.3 283 80.9
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 7.7e-142 507.3 283 82.7
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 1.3e-141 506.5 288 80.6
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.7e-141 506.1 284 81.3
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 2.2e-141 505.8 290 81.0
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 82.0
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 81.0
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.2e-141 505.8 282 83.3
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 79.9
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.5e-141 504.2 281 81.1
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 6.5e-141 504.2 284 81.0
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 8.5e-141 503.8 284 81.0
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 1.1e-140 503.4 283 80.6
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.1e-140 503.4 284 81.3
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.1e-140 503.4 286 81.1
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.5e-140 503.1 280 83.6
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 5.5e-140 501.1 298 80.2
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 5.5e-140 501.1 284 78.2
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.6e-139 499.6 272 82.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 4.7e-139 498.0 281 80.1
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 6.1e-139 497.7 281 80.4
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 5.2e-138 494.6 284 79.9
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 5.2e-138 494.6 279 81.4
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 5.2e-138 494.6 284 80.6
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 6.8e-138 494.2 284 81.3
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 8.8e-138 493.8 284 79.9
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.8e-138 493.8 301 76.7
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.0e-137 492.7 284 79.9
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.0e-137 492.7 284 79.9
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 79.2
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 79.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 5.7e-137 491.1 284 79.6
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 2.8e-136 488.8 279 79.9
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 3.7e-136 488.4 284 78.5
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 3.7e-136 488.4 285 80.0
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 3.7e-136 488.4 284 79.9
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 4.8e-136 488.0 285 79.6
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 4.8e-136 488.0 285 79.6
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 4.8e-136 488.0 271 82.3
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 6.3e-136 487.6 285 79.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 1.3e-133 479.9 284 75.4
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 9.4e-132 473.8 330 68.8
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.2e-131 473.4 284 76.1
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 4.9e-128 461.5 275 76.4
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 6.3e-128 461.1 247 85.0
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 5.4e-127 458.0 278 74.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 1.6e-126 456.4 276 75.4
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 3.3e-124 448.7 284 71.5
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.0e-122 443.7 274 75.9
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 2.0e-118 429.5 281 70.5
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.7e-118 429.1 286 72.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 5.9e-118 427.9 235 82.6
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.2e-113 413.7 234 79.1
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 5.0e-109 398.3 225 80.9
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 5.0e-109 398.3 279 66.3
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.9e-108 396.4 277 69.0
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 2.8e-107 392.5 278 66.5
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 1.4e-103 380.2 196 88.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 4.6e-102 375.2 219 79.9
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 3.6e-91 339.0 272 62.1
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 1.1e-90 337.4 283 56.5
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.0e-89 333.2 288 58.7
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 3.4e-81 305.8 171 83.6
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 2.9e-80 302.8 167 83.2
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-73 280.8 259 51.4
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.6e-65 253.1 276 46.7
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 6.5e-64 248.4 291 47.8
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 8.4e-64 248.1 277 48.0
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 7.9e-62 241.5 231 54.5
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 8.7e-53 211.5 116 82.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 6.5e-48 195.3 103 85.4
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 2.1e-22 110.5 78 70.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 8.5e-16 88.6 78 56.4
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 2.3e-13 80.5 71 54.9
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 4.9e-11 72.8 56 55.4
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 8.0e-06 55.5 47 57.4


User provided reference genes

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