Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.2e-122 441.8 227 100.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.4e-109 399.8 214 94.9
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 9.2e-106 387.1 227 88.1
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 85.0
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 88.1
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 88.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 85.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 85.5
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.6
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.1e-103 380.2 226 85.4
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.1
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.1
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 85.0
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 220 86.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.5e-103 379.0 220 86.8
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 82.4
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 83.3
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 84.1
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 83.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 82.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 83.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 83.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 84.1
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 83.7
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 83.3
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 8.1e-102 374.0 230 83.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.5
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 82.4
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.1e-101 372.1 225 84.4
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.1
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 81.9
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 6.8e-101 370.9 225 84.4
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 6.8e-101 370.9 228 83.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 8.9e-101 370.5 225 84.4
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-100 370.2 225 84.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.9
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 82.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.4e-100 368.6 229 81.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 4.4e-100 368.2 228 80.7
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 81.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 5.8e-100 367.9 228 81.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 80.6
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 80.6
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.3e-99 366.7 222 82.4
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.6
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 80.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 81.6
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 222 82.9
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 80.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 82.4
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 79.3
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 2.9e-99 365.5 229 82.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 3.8e-99 365.2 227 80.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.8e-99 365.2 228 81.1
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 4.9e-99 364.8 222 82.0
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 80.6
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.1e-98 363.6 227 80.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.4e-98 363.2 229 81.2
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.4e-98 362.5 226 81.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.2e-98 362.1 219 82.6
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 80.6
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 80.6
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 80.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 5.4e-98 361.3 213 85.4
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 7.1e-98 360.9 227 79.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 7.1e-98 360.9 217 82.0
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 80.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 79.3
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.6e-97 359.8 227 80.2
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.7e-97 359.0 224 79.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.5e-97 358.6 219 83.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.6e-97 358.2 227 79.3
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 4.6e-97 358.2 221 81.9
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.0e-97 357.8 227 78.9
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 6.0e-97 357.8 227 79.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.3e-96 356.7 224 79.9
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.7e-96 356.3 233 78.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.3e-96 355.9 217 81.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.4
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 6.6e-96 354.4 206 86.9
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 8.7e-96 354.0 265 71.3
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 8.7e-96 354.0 214 82.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.5e-95 353.2 227 77.1
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.9e-95 352.8 224 79.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.5e-95 352.4 214 81.8
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.3e-95 352.1 227 77.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.3e-95 351.7 219 79.5
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.3e-95 351.7 214 81.3
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 5.6e-95 351.3 207 84.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.3e-94 350.1 220 79.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.6e-94 349.7 219 79.5
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.6e-94 348.6 214 80.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.8e-94 348.2 218 81.2
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.1e-94 347.4 214 79.4
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.4e-93 346.7 206 83.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 3.1e-93 345.5 227 76.2
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.0e-92 342.8 225 78.7
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.8e-92 341.3 209 82.3
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.3e-91 340.1 205 81.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.2e-91 339.3 214 79.4
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 4.9e-91 338.2 214 79.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 6.4e-91 337.8 209 81.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.9e-90 336.3 215 77.7
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.4e-90 335.9 214 76.6
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.2e-90 335.5 202 83.7
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.9e-87 326.2 227 73.6
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.5e-87 325.9 237 72.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-86 323.2 195 83.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.8e-86 322.4 214 74.3
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-83 313.5 212 72.6
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.2e-83 312.8 190 82.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.2e-82 308.9 191 78.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 7.9e-81 304.3 227 70.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.4e-79 297.7 195 75.4
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.7e-78 295.4 222 72.1
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.4e-77 293.5 214 69.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.2e-75 286.2 216 69.0
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.5e-74 282.7 164 87.2
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.6e-73 280.0 224 64.7
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.8e-69 266.5 193 69.9
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.4e-69 266.2 164 79.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.1e-69 265.4 193 73.6
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.7e-67 260.0 229 63.3
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 6.5e-67 258.1 197 70.1
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 8.4e-67 257.7 227 63.4
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.5e-65 252.3 160 77.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 7.9e-65 251.1 150 82.7
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 7.7e-60 234.6 237 52.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 8.5e-59 231.1 153 71.9
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.5e-58 229.6 164 73.8
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.7e-54 216.9 215 53.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 2.9e-51 206.1 201 58.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.9e-51 206.1 131 74.0
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.0e-40 169.1 100 79.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 2.6e-39 166.4 105 81.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.8e-35 152.5 115 67.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 8.0e-33 144.8 135 60.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-29 133.7 109 65.1
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 7.7e-28 128.3 92 66.3
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-26 124.4 87 70.1
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.4e-23 112.8 113 55.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 4.3e-18 95.9 63 69.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.2e-17 94.4 51 88.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.3e-14 84.3 97 50.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.0e-12 77.0 70 61.4
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.6e-12 75.9 114 41.2
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 6.6e-11 72.0 68 55.9
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 8.6e-11 71.6 206 28.6
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.2e-07 61.2 63 54.0
SGA_v2.0_scaffold131G34397 Striga asiatica HOM05D000083 ORTHO05D000196 1.7e-06 57.4 74 39.2
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 4.9e-06 55.8 155 31.0


User provided reference genes

Program Settings