Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.2e-107 391.7 194 100.0
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 2.3e-89 332.4 185 87.6
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 3.3e-88 328.6 185 86.5
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 7.4e-88 327.4 193 82.4
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.4e-86 323.2 185 84.3
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.4e-86 323.2 185 83.8
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.5e-85 319.7 185 83.8
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.6e-85 318.9 177 86.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 4.4e-80 301.6 185 82.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.3e-79 300.1 178 77.5
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 4.1e-78 295.0 173 78.6
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.6e-77 293.1 177 77.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 5.9e-77 291.2 173 78.0
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.7e-77 290.8 173 77.5
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.7e-76 289.7 173 77.5
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.5e-75 286.6 171 79.5
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.5e-75 286.6 175 78.3
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.5e-75 284.6 173 76.3
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 9.4e-75 283.9 173 76.3
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.1e-74 282.7 175 75.4
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 2.1e-74 282.7 175 75.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.7e-74 282.3 175 74.9
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 3.6e-74 282.0 173 76.9
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.6e-74 282.0 173 72.8
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 8.0e-74 280.8 175 73.7
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 8.0e-74 280.8 173 72.8
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 8.0e-74 280.8 173 75.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.0e-73 280.4 175 74.3
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.8e-73 279.6 175 72.6
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.8e-73 279.6 181 74.0
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.0e-73 278.9 175 73.7
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 5.2e-73 278.1 173 70.5
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 6.7e-73 277.7 177 73.4
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.8e-73 277.3 173 75.1
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.1e-72 276.9 171 71.9
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-72 276.9 178 70.8
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.1e-72 276.9 178 70.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.5e-72 276.6 173 74.6
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.5e-72 276.6 185 76.8
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.5e-72 276.6 184 78.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.6e-72 275.8 185 68.1
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.6e-72 275.8 175 72.0
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.3e-72 275.4 186 71.0
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.3e-72 275.4 178 71.9
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 4.4e-72 275.0 173 73.4
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 4.4e-72 275.0 175 73.1
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 4.4e-72 275.0 173 71.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 9.7e-72 273.9 175 73.1
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.3e-71 273.5 175 70.9
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-71 273.5 178 69.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.7e-71 273.1 173 70.5
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.4e-70 270.0 173 71.1
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.4e-70 270.0 175 71.4
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.4e-70 270.0 177 72.3
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-70 269.6 175 70.3
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.4e-70 269.2 173 74.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.1e-70 268.9 183 73.8
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.1e-70 268.9 177 71.8
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 3.1e-70 268.9 182 71.4
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.1e-70 268.5 177 71.2
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.6e-69 266.5 175 69.1
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.6e-69 266.5 184 66.8
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 7.7e-69 264.2 175 69.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 7.7e-69 264.2 175 69.1
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.2e-68 262.7 173 70.5
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.0e-68 261.5 173 70.5
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 8.5e-68 260.8 175 67.4
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.1e-67 260.4 191 66.0
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 3.2e-67 258.8 182 72.5
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 5.5e-67 258.1 174 69.5
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.6e-66 256.5 176 69.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 2.7e-66 255.8 176 68.8
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 7.5e-64 247.7 178 64.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 9.8e-64 247.3 175 66.9
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.7e-63 246.5 185 62.7
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.7e-63 246.5 176 66.5
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.8e-63 245.0 178 66.3
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 5.4e-62 241.5 185 62.7
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 7.0e-62 241.1 208 57.7
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.7e-61 239.2 241 50.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 4.5e-61 238.4 176 63.6
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.9e-59 233.0 147 74.1
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-59 232.6 175 64.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.5e-59 232.6 144 73.6
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 3.2e-59 232.3 173 63.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.2e-59 231.1 175 62.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.8e-57 226.5 177 61.6
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-56 223.8 183 61.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 9.8e-56 220.7 184 60.9
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 4.5e-53 211.8 176 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.2e-50 203.8 171 54.4
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 6.1e-50 201.4 176 52.8
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 3.0e-49 199.1 121 75.2
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 4.0e-49 198.7 177 57.1
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.9e-47 192.6 185 55.7
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 7.0e-46 188.0 171 54.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.6e-45 185.3 172 52.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 3.1e-41 172.6 124 65.3
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 4.0e-41 172.2 110 72.7
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 9.8e-40 167.5 124 64.5
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.2e-39 166.4 127 63.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.2e-37 160.6 173 47.4
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.3e-36 157.1 92 78.3
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.5e-35 153.7 94 75.5
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.1e-33 147.5 105 64.8
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.0e-33 145.6 93 69.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.3e-31 140.6 81 74.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 4.1e-30 135.6 94 63.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.2e-29 134.0 95 69.5
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 1.2e-29 134.0 87 75.9
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.1e-29 133.3 94 64.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 7.8e-29 131.3 164 41.5
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 8.9e-25 117.9 89 58.4
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.4e-24 115.5 80 65.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 3.8e-23 112.5 171 34.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 8.4e-23 111.3 81 63.0
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-19 100.1 66 68.2
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-18 97.4 66 65.2
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.1e-17 94.4 124 38.7
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 4.0e-17 92.4 67 62.7
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-13 79.3 54 64.8
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 2.8e-10 69.7 52 57.7


User provided reference genes

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